Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0094581 Rosa chinensis HOM05D000765 ORTHO05D347969 1.5e-32 142.1 64 100.0
FvH4_4g31620 Fragaria vesca HOM05D000765 ORTHO05D000613 1.3e-12 75.9 42 88.1
FAN22G0484 Fragaria x ananassa HOM05D000765 ORTHO05D000613 1.3e-12 75.9 42 88.1
FAN12G3967 Fragaria x ananassa HOM05D000765 ORTHO05D000613 2.9e-12 74.7 42 85.7
RcHm_v2.0_Chr4g0440131 Rosa chinensis HOM05D000765 ORTHO05D000613 3.7e-12 74.3 42 83.3
Phvul.003G067600 Phaseolus vulgaris HOM05D000765 ORTHO05D000613 8.3e-12 73.2 41 82.9
Ca_24250_v3 Cicer arietinum L. HOM05D000765 ORTHO05D000613 1.1e-11 72.8 41 82.9
VMungo0251G2823 Vigna mungo HOM05D000765 ORTHO05D000613 1.1e-11 72.8 41 82.9
Glyma.08G298500 Glycine max HOM05D000765 ORTHO05D000613 2.4e-11 71.6 41 80.5
Glyma.18G123400 Glycine max HOM05D000765 ORTHO05D000613 2.4e-11 71.6 41 80.5
Lalb_Chr16g0392631 Lupinus albus HOM05D000765 ORTHO05D000613 3.2e-11 71.2 41 80.5
Potri.008G148100 Populus trichocarpa HOM05D000765 ORTHO05D000613 7.0e-11 70.1 48 66.7
Eucgr.B03418 Eucalyptus grandis HOM05D000765 ORTHO05D000613 9.2e-11 69.7 41 78.0
Lj4g0012235 Lotus japonicus HOM05D000765 ORTHO05D000613 9.2e-11 69.7 41 80.5
ClCG09G021940 Citrullus lanatus HOM05D000765 ORTHO05D000613 1.6e-10 68.9 41 80.5
MELO3C002966.2 Cucumis melo HOM05D000765 ORTHO05D000613 1.6e-10 68.9 41 80.5
CsaV3_5G025170 Cucumis sativus L. HOM05D000765 ORTHO05D000613 1.6e-10 68.9 41 80.5
Sed0005819 Sechium edule HOM05D000765 ORTHO05D000613 1.6e-10 68.9 41 80.5
CANSAT64G0700 Cannabis sativa HOM05D000765 ORTHO05D000613 2.0e-10 68.6 41 78.0
TPR.G33255 Trifolium pratense HOM05D000765 ORTHO05D000613 2.0e-10 68.6 41 78.0
Rhsim12G0131800 Rhododendron simsii HOM05D000765 ORTHO05D000613 2.7e-10 68.2 41 78.0
MD13G1074600 Malus domestica HOM05D000765 ORTHO05D000613 3.5e-10 67.8 42 78.6
MD16G1075900 Malus domestica HOM05D000765 ORTHO05D000613 3.5e-10 67.8 42 78.6
Sc11g0001770 Simmondsia chinensis HOM05D000765 ORTHO05D000613 4.6e-10 67.4 41 75.6
Medtr8g468330 Medicago truncatula HOM05D000765 ORTHO05D000613 7.8e-10 66.6 41 75.6
GSVIVG01020031001 Vitis vinifera HOM05D000765 ORTHO05D000613 7.8e-10 66.6 48 66.7
Actinidia31198 Actinidia chinensis HOM05D000765 ORTHO05D000613 1.0e-09 66.2 41 75.6
Psat4g175520 Pisum sativum HOM05D000765 ORTHO05D000613 1.0e-09 66.2 41 75.6
TWI38G1798 Tripterygium wilfordii HOM05D000765 ORTHO05D000613 1.0e-09 66.2 41 75.6
EL10Ac6g13176 Beta vulgaris HOM05D000765 ORTHO05D000613 1.3e-09 65.9 41 75.6
AUR62005747 Chenopodium quinoa HOM05D000765 ORTHO05D000613 1.3e-09 65.9 41 75.6
AUR62028811 Chenopodium quinoa HOM05D000765 ORTHO05D000613 1.3e-09 65.9 41 75.6
Manes.05G099000 Manihot esculenta HOM05D000765 ORTHO05D000613 1.3e-09 65.9 41 75.6
Atru.chr11.1832 Acer truncatum HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 75.6
arahy.Tifrunner.gnm1.ann1.DN66JW Arachis hypogaea HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 75.6
BcaB07g30319 Brassica carinata HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BcaC03g17173 Brassica carinata HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BcaC06g31211 Brassica carinata HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BcaC06g34032 Brassica carinata HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
A02p33150 Brassica napus HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
A06p43420 Brassica napus HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
C07p33530 Brassica napus HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BolC7t43864H Brassica oleracea HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BraA02t08338Z Brassica rapa HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
BraA06t27227Z Brassica rapa HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
Cpa.g.sc183.30 Carica papaya HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 75.6
COL.COLO4_22975 Corchorus olitorius HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 70.7
DCAR_031034 Daucus carota HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
Duzib251G0898 Durio zibethinus HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 70.7
Thhalv10003879m.g Eutrema salsugineum HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
Hma1.2p1_0598F.1_g186790 Hydrangea macrophylla HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 75.6
PGR102G2827 Punica granatum HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 75.6
Sp2g13940 Schrenkiella parvula HOM05D000765 ORTHO05D000613 1.7e-09 65.5 41 73.2
Aa31LG2G7430 Aethionema arabicum HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 70.7
CiPaw.05G137800 Carya illinoinensis HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 73.2
Gohir.A03G099300 Gossypium hirsutum HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 73.2
Gorai.005G139700 Gossypium raimondii HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 73.2
Sabra10G0066000 Salix brachista HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 73.2
Thecc.02G348700 Theobroma cacao HOM05D000765 ORTHO05D000613 2.3e-09 65.1 41 73.2
AL5G12410 Arabidopsis lyrata HOM05D000765 ORTHO05D000613 3.0e-09 64.7 41 73.2
ECA246G0346 Erigeron canadensis HOM05D000765 ORTHO05D000613 3.0e-09 64.7 41 70.7
Gorai.013G083700 Gossypium raimondii HOM05D000765 ORTHO05D000613 3.0e-09 64.7 41 73.2
Potri.010G093600 Populus trichocarpa HOM05D000765 ORTHO05D000613 3.0e-09 64.7 41 70.7
SGA_v2.0_scaffold302G47839 Striga asiatica HOM05D000765 ORTHO05D000613 3.0e-09 64.7 41 73.2
ATR0564G342 Amborella trichopoda HOM05D000765 ORTHO05D000613 3.9e-09 64.3 48 58.3
Carub.0005s0175 Capsella rubella HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 70.7
Ciclev10030996m.g Citrus clementina HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 73.2
Gohir.D13G072900 Gossypium hirsutum HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 73.2
Oeu001581.1 Olea europaea HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 73.2
Sed0012271 Sechium edule HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 73.2
TWI39G1005 Tripterygium wilfordii HOM05D000765 ORTHO05D000613 3.9e-09 64.3 41 70.7
ATR0564G387 Amborella trichopoda HOM05D000765 ORTHO05D000613 6.6e-09 63.5 48 58.3
C02p50960 Brassica napus HOM05D000765 ORTHO05D000613 6.6e-09 63.5 41 70.7
CAN.G512.4 Capsicum annuum HOM05D000765 ORTHO05D000613 6.6e-09 63.5 41 68.3
CiPaw.06G082700 Carya illinoinensis HOM05D000765 ORTHO05D000613 6.6e-09 63.5 41 73.2
Gohir.A13G072900 Gossypium hirsutum HOM05D000765 ORTHO05D000613 8.6e-09 63.2 41 70.7
vmacro16340 Vaccinium macrocarpon HOM05D000765 ORTHO05D000613 8.6e-09 63.2 41 73.2
Cfa009005 Carpinus fangiana HOM05D000765 ORTHO05D000613 1.1e-08 62.8 41 70.7
Gohir.A12G165900 Gossypium hirsutum HOM05D000765 ORTHO05D000613 1.1e-08 62.8 41 70.7
TAR622G1436 Trochodendron aralioides HOM05D000765 ORTHO05D000613 1.1e-08 62.8 41 73.2
TAR629G0095 Trochodendron aralioides HOM05D000765 ORTHO05D000613 1.1e-08 62.8 41 73.2
TAR629G0992 Trochodendron aralioides HOM05D000765 ORTHO05D000613 1.1e-08 62.8 41 73.2
HanXRQChr04g0095911 Helianthus annuus HOM05D000765 ORTHO05D000613 1.5e-08 62.4 41 70.7
HanXRQChr17g0545151 Helianthus annuus HOM05D000765 ORTHO05D000613 1.5e-08 62.4 41 70.7
Lsat_1_v5_gn_8_52120 Lactuca sativa HOM05D000765 ORTHO05D000613 1.5e-08 62.4 41 68.3
Nn3g17174 Nelumbo nucifera HOM05D000765 ORTHO05D000613 1.5e-08 62.4 41 70.7
MSTRG.686 Avicennia marina HOM05D000765 ORTHO05D000613 1.9e-08 62.0 41 68.3
Gohir.D02G124200 Gossypium hirsutum HOM05D000765 ORTHO05D000613 1.9e-08 62.0 41 70.7
QL03p064873 Quercus lobata HOM05D000765 ORTHO05D000613 1.9e-08 62.0 41 68.3
Zm00001eb259340 Zea mays HOM05D000765 ORTHO05D000613 1.9e-08 62.0 41 68.3
Cc11_g13300 Coffea canephora HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 68.3
Gohir.D12G169300 Gossypium hirsutum HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 70.7
Gorai.008G181900 Gossypium raimondii HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 70.7
Nitab4.5_0003062g0010 Nicotiana tabacum HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 65.9
Nitab4.5_0003586g0020 Nicotiana tabacum HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 65.9
THA.LOC104805147 Tarenaya hassleriana HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 73.2
TAR371G0057 Trochodendron aralioides HOM05D000765 ORTHO05D000613 2.5e-08 61.6 41 70.7
CSS0032093 Camellia sinensis var. sinensis HOM05D000765 ORTHO05D000613 3.3e-08 61.2 41 65.9
CDE08G0866 Ceratophyllum demersum HOM05D000765 ORTHO05D000613 3.3e-08 61.2 41 68.3
Solyc05g007190.4 Solanum lycopersicum HOM05D000765 ORTHO05D000613 3.3e-08 61.2 41 65.9
Sopen05g003150 Solanum pennellii HOM05D000765 ORTHO05D000613 3.3e-08 61.2 41 65.9
unitig_747.g21173 Utricularia gibba HOM05D000765 ORTHO05D000613 4.3e-08 60.8 41 63.4
HPP92_025759 Vanilla planifolia HOM05D000765 ORTHO05D000613 5.6e-08 60.5 47 61.7
CDE02G1311 Ceratophyllum demersum HOM05D000765 ORTHO05D000613 7.3e-08 60.1 41 65.9
Os02g0827200 Oryza sativa ssp. japonica HOM05D000765 ORTHO05D000613 7.3e-08 60.1 41 68.3
Haze_12034 Corylus avellana HOM05D000765 ORTHO05D000613 1.2e-07 59.3 41 68.3
PSO017G5296 Papaver somniferum HOM05D000765 ORTHO05D000613 1.6e-07 58.9 41 65.9
PSO478G0577 Papaver somniferum HOM05D000765 ORTHO05D000613 1.6e-07 58.9 41 65.9
SEGI_05704 Sequoiadendron giganteum HOM05D000765 ORTHO05D000613 1.6e-07 58.9 41 65.9
Zm00001eb244930 Zea mays HOM05D000765 ORTHO05D000613 1.6e-07 58.9 49 61.2
Mapoly0037s0109 Marchantia polymorpha HOM05D000765 ORTHO05D000613 2.1e-07 58.5 41 61.0
HPP92_025717 Vanilla planifolia HOM05D000765 ORTHO05D000613 2.1e-07 58.5 47 59.6
arahy.Tifrunner.gnm1.ann1.KKV2SS Arachis hypogaea HOM05D000765 ORTHO05D000613 3.6e-07 57.8 40 72.5
Zm00001eb183000 Zea mays HOM05D000765 ORTHO05D000613 3.6e-07 57.8 49 55.1
Os02g0576600 Oryza sativa ssp. japonica HOM05D000765 ORTHO05D000613 4.7e-07 57.4 49 59.2
Aqoxy3G00705 Aquilegia oxysepala HOM05D000765 ORTHO05D000613 3.1e-06 54.7 41 61.0
Pp3c1_32060 Physcomitrium patens HOM05D000765 ORTHO05D000613 5.2e-06 53.9 41 58.5
HanXRQChr05g0139101 Helianthus annuus HOM05D000765 ORTHO05D000613 6.8e-06 53.5 48 56.2
Os03g0170900 Oryza sativa ssp. japonica HOM05D000765 ORTHO05D000613 6.8e-06 53.5 47 53.2
Pp3c2_3000 Physcomitrium patens HOM05D000765 ORTHO05D000613 6.8e-06 53.5 41 58.5


User provided reference genes

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