Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.8e-205 719.2 395 100.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.9e-192 674.9 392 92.6
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.0e-192 674.5 392 93.4
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.9e-191 672.5 392 90.1
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.9e-191 672.5 392 90.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.9e-191 672.5 392 92.9
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.3e-191 671.4 392 92.6
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 3.0e-176 622.1 366 90.7
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 2.5e-175 619.0 361 90.9
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.2e-174 616.7 375 88.8
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.4e-170 602.4 358 88.8
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 5.1e-168 594.7 362 85.1
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 9.6e-167 590.5 366 84.7
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 9.0e-165 583.9 365 84.4
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.5e-164 583.2 366 84.7
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.4e-164 582.0 365 85.2
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 5.8e-164 581.3 366 83.3
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 7.6e-164 580.9 366 84.2
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 7.6e-164 580.9 366 84.2
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.7e-163 579.7 364 84.3
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.7e-163 579.7 359 85.5
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.2e-163 579.3 362 85.1
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.1e-162 577.0 373 82.0
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 4.2e-162 575.1 376 81.4
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 5.4e-162 574.7 365 83.6
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 9.3e-162 573.9 372 81.5
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.2e-161 573.5 358 79.6
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.7e-161 572.4 369 80.8
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 3.5e-161 572.0 366 84.2
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 4.6e-161 571.6 364 83.5
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 4.6e-161 571.6 359 83.8
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 4.6e-161 571.6 366 82.5
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 6.0e-161 571.2 369 80.8
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 6.0e-161 571.2 348 86.5
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.0e-161 571.2 360 80.0
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.8e-161 570.9 360 80.0
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.0e-160 570.5 359 83.8
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 2.3e-160 569.3 358 84.1
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.0e-160 568.9 372 80.4
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 3.0e-160 568.9 347 86.2
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 3.9e-160 568.5 369 77.8
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.1e-160 568.2 369 81.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 5.1e-160 568.2 344 81.7
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.1e-159 567.0 359 83.3
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.1e-159 567.0 359 83.3
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.1e-159 567.0 368 81.8
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.5e-159 566.6 357 82.6
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.5e-159 565.8 362 83.1
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.5e-159 565.8 356 80.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.3e-159 565.5 366 79.8
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.3e-159 565.1 360 79.2
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 4.3e-159 565.1 362 82.6
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 4.3e-159 565.1 360 81.7
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 7.3e-159 564.3 372 75.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 7.3e-159 564.3 357 84.6
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 7.3e-159 564.3 395 77.2
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 7.3e-159 564.3 349 85.4
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.3e-158 563.5 369 76.7
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.8e-158 562.4 368 79.6
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.8e-158 562.4 366 81.7
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.6e-158 562.0 372 76.1
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.6e-158 562.0 366 82.8
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 6.2e-158 561.2 372 79.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 6.2e-158 561.2 373 75.9
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.1e-157 560.5 359 81.1
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.1e-157 560.5 367 75.7
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 3.1e-157 558.9 369 77.0
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.1e-157 558.9 361 80.3
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 3.1e-157 558.9 361 78.4
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.0e-157 558.5 366 79.0
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 5.3e-157 558.1 374 76.2
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 9.0e-157 557.4 360 80.6
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 2.0e-156 556.2 362 81.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.0e-156 556.2 369 79.7
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 2.6e-156 555.8 359 81.1
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 1.3e-155 553.5 363 78.2
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.3e-155 553.5 366 80.1
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 2.2e-155 552.7 367 74.9
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 4.9e-155 551.6 362 80.9
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.9e-155 551.6 362 80.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 4.9e-155 551.6 366 75.1
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 6.4e-155 551.2 363 78.0
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.4e-155 551.2 366 74.3
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 6.4e-155 551.2 366 74.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.4e-155 550.8 366 74.6
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.1e-154 550.4 337 83.1
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.1e-154 550.4 384 78.4
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.4e-154 549.3 352 79.8
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 3.2e-154 548.9 361 81.2
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.7e-153 545.8 360 80.8
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 7.9e-153 544.3 360 76.7
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.8e-152 543.1 343 81.9
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 3.0e-152 542.3 343 81.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 3.0e-152 542.3 390 70.8
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.5e-151 539.3 360 78.3
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.3e-151 538.9 372 78.0
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.3e-151 538.9 343 81.3
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 4.3e-151 538.5 369 78.9
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 7.4e-151 537.7 360 78.1
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 2.1e-150 536.2 366 80.1
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.7e-150 535.4 337 82.8
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 6.2e-150 534.6 362 73.5
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 1.8e-149 533.1 377 73.5
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 2.4e-149 532.7 313 82.7
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 5.3e-149 531.6 359 78.6
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-148 530.4 352 75.9
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 4.5e-148 528.5 367 73.8
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 7.6e-148 527.7 450 66.0
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.7e-147 526.6 355 74.6
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 2.9e-147 525.8 365 72.1
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 6.4e-147 524.6 366 73.0
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 4.2e-146 521.9 365 72.1
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.2e-145 520.4 350 74.0
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.6e-145 520.0 340 78.8
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 3.5e-145 518.8 299 83.6
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.3e-144 516.2 372 71.2
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 8.7e-144 514.2 343 74.3
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 7.4e-143 511.1 359 73.0
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 9.6e-143 510.8 313 79.9
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.2e-140 503.8 349 71.6
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 2.6e-140 502.7 366 71.9
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 3.8e-139 498.8 341 74.2
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.9e-139 498.4 360 75.3
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 6.0e-137 491.5 350 77.4
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 1.8e-136 490.0 286 82.5
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 8.7e-136 487.6 294 86.4
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-135 486.9 303 83.5
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.8e-134 482.6 373 71.8
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.8e-134 481.9 383 66.6
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 5.3e-133 478.4 349 74.5
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.0e-132 476.5 343 72.9
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 4.5e-132 475.3 379 69.1
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 4.5e-132 475.3 374 70.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.5e-130 468.4 310 76.8
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.1e-127 460.7 272 82.7
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 5.7e-127 458.4 298 72.5
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 4.1e-125 452.2 354 62.4
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.3e-119 432.6 304 67.1
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.8e-118 428.7 371 61.5
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 8.2e-118 427.9 266 79.7
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.8e-117 426.8 333 61.6
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.4e-117 426.4 345 61.7
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 7.0e-117 424.9 335 68.7
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.9e-114 416.8 300 66.3
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 5.7e-111 405.2 306 63.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.6e-108 396.4 355 65.4
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 3.5e-108 396.0 221 86.9
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 7.7e-108 394.8 401 55.9
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.6e-100 370.5 233 79.8
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 5.5e-90 335.5 303 55.8
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 6.3e-86 322.0 211 70.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.7e-83 313.9 201 81.1
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 2.5e-74 283.5 210 73.3
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 6.6e-67 258.8 375 46.4
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 3.6e-57 226.5 170 72.9
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 4.7e-57 226.1 178 62.4
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.3e-43 181.4 164 59.8
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.8e-33 147.1 89 83.1
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 7.1e-29 132.5 299 31.1
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.1e-28 131.0 103 65.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 8.2e-25 119.0 335 29.0
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 6.5e-22 109.4 300 27.0
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 8.4e-22 109.0 65 76.9
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.1e-20 104.4 245 36.3
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 2.7e-20 104.0 77 88.3
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 6.1e-20 102.8 95 78.9
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 2.5e-18 97.4 61 82.0
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 2.5e-18 97.4 61 82.0
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 5.7e-18 96.3 61 82.0
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.8e-16 91.3 377 25.5
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 9.0e-16 89.0 59 72.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.5e-15 86.7 57 78.9
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 3.3e-10 70.5 108 35.2
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.7e-10 68.9 33 97.0
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 2.2e-09 67.8 59 86.4
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.5e-07 61.6 41 70.7
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 2.6e-07 60.8 41 68.3
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 4.5e-07 60.1 39 71.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 2.2e-06 57.8 49 59.2


User provided reference genes

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