Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0093991 Rosa chinensis HOM05D002851 ORTHO05D003084 1.9e-60 235.7 124 100.0
FAN26G0008 Fragaria x ananassa HOM05D002851 ORTHO05D003084 1.4e-34 149.8 195 50.8
RcHm_v2.0_Chr2g0091901 Rosa chinensis HOM05D002851 ORTHO05D003084 1.5e-33 146.4 97 83.5
FAN28G1439 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.6e-33 145.6 196 50.0
FvH4_1g06800 Fragaria vesca HOM05D002851 ORTHO05D003084 5.7e-33 144.4 118 71.2
FAN26G1704 Fragaria x ananassa HOM05D002851 ORTHO05D003084 5.7e-33 144.4 118 71.2
FAN19G2701 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.2e-32 142.5 118 70.3
FAN23G0939 Fragaria x ananassa HOM05D002851 ORTHO05D003084 2.0e-25 119.4 119 63.9
MD15G1202400 Malus domestica HOM05D002851 ORTHO05D003084 1.7e-24 116.3 102 67.6
Prupe.7G214800 Prunus persica HOM05D002851 ORTHO05D003084 1.4e-23 113.2 104 64.4
RcHm_v2.0_Chr2g0092571 Rosa chinensis HOM05D002851 ORTHO05D003084 5.3e-23 111.3 94 71.3
CSS0042051 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 6.1e-19 97.8 99 59.6
Hma1.2p1_1074F.1_g254330 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 1.2e-17 93.6 112 54.5
Hma1.2p1_2738F.1_g327690 Hydrangea macrophylla HOM05D002851 ORTHO05D003084 1.5e-17 93.2 112 54.5
Thecc.09G094400 Theobroma cacao HOM05D002851 ORTHO05D003084 2.6e-17 92.4 90 57.8
Actinidia39749 Actinidia chinensis HOM05D002851 ORTHO05D003084 3.4e-17 92.0 106 54.7
Gohir.D08G265500 Gossypium hirsutum HOM05D002851 ORTHO05D003084 3.4e-17 92.0 93 58.1
Gorai.004G283500 Gossypium raimondii HOM05D002851 ORTHO05D003084 3.4e-17 92.0 93 58.1
CANSAT64G0550 Cannabis sativa HOM05D002851 ORTHO05D003084 4.4e-17 91.7 60 73.3
Duzib187G0612 Durio zibethinus HOM05D002851 ORTHO05D003084 4.4e-17 91.7 94 57.4
Haze_25868 Corylus avellana HOM05D002851 ORTHO05D003084 7.5e-17 90.9 103 53.4
Manes.16G105200 Manihot esculenta HOM05D002851 ORTHO05D003084 7.5e-17 90.9 110 51.8
Eucgr.C00930 Eucalyptus grandis HOM05D002851 ORTHO05D003084 4.8e-16 88.2 96 60.4
Sed0010089 Sechium edule HOM05D002851 ORTHO05D003084 1.1e-15 87.0 66 69.7
Cfa003135 Carpinus fangiana HOM05D002851 ORTHO05D003084 1.4e-15 86.7 103 51.5
MELO3C015440.2 Cucumis melo HOM05D002851 ORTHO05D003084 1.8e-15 86.3 72 66.7
CSS0042934 Camellia sinensis var. sinensis HOM05D002851 ORTHO05D003084 2.4e-15 85.9 99 54.5
PGR142G3716 Punica granatum HOM05D002851 ORTHO05D003084 4.1e-15 85.1 100 53.0
ClCG03G015860 Citrullus lanatus HOM05D002851 ORTHO05D003084 7.0e-15 84.3 72 66.7
CsaV3_1G040120 Cucumis sativus L. HOM05D002851 ORTHO05D003084 7.0e-15 84.3 73 65.8
CsaV3_UNG050390 Cucumis sativus L. HOM05D002851 ORTHO05D003084 7.0e-15 84.3 73 65.8
Eucgr.L03533 Eucalyptus grandis HOM05D002851 ORTHO05D003084 7.0e-15 84.3 68 72.1
Gohir.A08G244600 Gossypium hirsutum HOM05D002851 ORTHO05D003084 9.1e-15 84.0 93 54.8
TWI63G1263 Tripterygium wilfordii HOM05D002851 ORTHO05D003084 9.1e-15 84.0 51 78.4
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 4.5e-14 81.6 57 68.4
Nitab4.5_0007607g0040 Nicotiana tabacum HOM05D002851 ORTHO05D003084 4.5e-14 81.6 60 66.7
MSTRG.10584 Avicennia marina HOM05D002851 ORTHO05D003084 5.9e-14 81.3 86 59.3
Nitab4.5_0017633g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 7.7e-14 80.9 63 65.1
Nitab4.5_0029443g0010 Nicotiana tabacum HOM05D002851 ORTHO05D003084 1.0e-13 80.5 66 62.1
Atru.chr7.1523 Acer truncatum HOM05D002851 ORTHO05D003084 1.3e-13 80.1 153 35.9
CiPaw.03G219900 Carya illinoinensis HOM05D002851 ORTHO05D003084 1.3e-13 80.1 48 81.2
COL.COLO4_18243 Corchorus olitorius HOM05D002851 ORTHO05D003084 2.9e-13 79.0 66 60.6
Sc18g0001770 Simmondsia chinensis HOM05D002851 ORTHO05D003084 2.9e-13 79.0 51 72.5
arahy.Tifrunner.gnm1.ann1.8C5UM8 Arachis hypogaea HOM05D002851 ORTHO05D003084 3.8e-13 78.6 156 38.5
Cc06_g10950 Coffea canephora HOM05D002851 ORTHO05D003084 3.8e-13 78.6 66 65.2
Peaxi162Scf00078g01324 Petunia axillaris HOM05D002851 ORTHO05D003084 3.8e-13 78.6 59 62.7
THA.LOC104803991 Tarenaya hassleriana HOM05D002851 ORTHO05D003084 5.0e-13 78.2 62 64.5
SalBow1G1827 Salvia bowleyana HOM05D002851 ORTHO05D003084 6.5e-13 77.8 95 52.6
SGA_v2.0_scaffold2G00995 Striga asiatica HOM05D002851 ORTHO05D003084 6.5e-13 77.8 66 63.6
MBI01_g16576_MAGBIO Magnolia biondii HOM05D002851 ORTHO05D003084 8.5e-13 77.4 76 55.3
EL10Ac7g15865 Beta vulgaris HOM05D002851 ORTHO05D003084 1.1e-12 77.0 51 72.5
Lj7P671T19 Lonicera japonica HOM05D002851 ORTHO05D003084 1.1e-12 77.0 105 49.5
AUR62004767 Chenopodium quinoa HOM05D002851 ORTHO05D003084 1.5e-12 76.6 51 72.5
SalBow1G2138 Salvia bowleyana HOM05D002851 ORTHO05D003084 1.5e-12 76.6 95 51.6
GSVIVG01015249001 Vitis vinifera HOM05D002851 ORTHO05D003084 1.5e-12 76.6 43 81.4
Aqoxy7G03927 Aquilegia oxysepala HOM05D002851 ORTHO05D003084 1.9e-12 76.3 57 63.2
Cpa.g.sc3389.1 Carica papaya HOM05D002851 ORTHO05D003084 1.9e-12 76.3 93 52.7
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 3.2e-12 75.5 49 71.4
Migut.K00573 Erythranthe guttata HOM05D002851 ORTHO05D003084 3.2e-12 75.5 55 69.1
AUR62037484 Chenopodium quinoa HOM05D002851 ORTHO05D003084 4.2e-12 75.1 51 70.6
vmacro06272 Vaccinium macrocarpon HOM05D002851 ORTHO05D003084 4.2e-12 75.1 60 70.0
EL10Ac7g15856 Beta vulgaris HOM05D002851 ORTHO05D003084 9.4e-12 73.9 51 66.7
Psat6g101840 Pisum sativum HOM05D002851 ORTHO05D003084 9.4e-12 73.9 87 50.6
DCAR_028629 Daucus carota HOM05D002851 ORTHO05D003084 1.2e-11 73.6 110 45.5
Medtr8g046180 Medicago truncatula HOM05D002851 ORTHO05D003084 1.2e-11 73.6 73 58.9
Hund13135 Selenicereus undatus HOM05D002851 ORTHO05D003084 2.1e-11 72.8 79 53.2
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 3.6e-11 72.0 76 55.3
Rhsim03G0234800 Rhododendron simsii HOM05D002851 ORTHO05D003084 3.6e-11 72.0 60 66.7
Ciclev10009026m.g Citrus clementina HOM05D002851 ORTHO05D003084 6.1e-11 71.2 62 58.1
Aa31LG2G21030 Aethionema arabicum HOM05D002851 ORTHO05D003084 8.0e-11 70.9 49 65.3
Lsat_1_v5_gn_5_146061 Lactuca sativa HOM05D002851 ORTHO05D003084 8.0e-11 70.9 61 62.3
Potri.014G148300 Populus trichocarpa HOM05D002851 ORTHO05D003084 8.0e-11 70.9 60 61.7
A01p08630 Brassica napus HOM05D002851 ORTHO05D003084 1.0e-10 70.5 49 67.3
Lalb_Chr19g0132441 Lupinus albus HOM05D002851 ORTHO05D003084 1.4e-10 70.1 90 48.9
CAN.G1010.14 Capsicum annuum HOM05D002851 ORTHO05D003084 1.8e-10 69.7 48 66.7
unitig_8.g4696 Utricularia gibba HOM05D002851 ORTHO05D003084 1.8e-10 69.7 62 61.3
Thhalv10025901m.g Eutrema salsugineum HOM05D002851 ORTHO05D003084 2.3e-10 69.3 49 65.3
arahy.Tifrunner.gnm1.ann1.U2SVZE Arachis hypogaea HOM05D002851 ORTHO05D003084 3.0e-10 68.9 193 32.1
PGSC0003DMG400028767 Solanum tuberosum HOM05D002851 ORTHO05D003084 5.2e-10 68.2 66 56.1
BcaC09g51725 Brassica carinata HOM05D002851 ORTHO05D003084 6.8e-10 67.8 91 49.5
BolC1t00968H Brassica oleracea HOM05D002851 ORTHO05D003084 6.8e-10 67.8 91 49.5
Solyc10g045310.2 Solanum lycopersicum HOM05D002851 ORTHO05D003084 8.8e-10 67.4 61 55.7
Sopen10g014480 Solanum pennellii HOM05D002851 ORTHO05D003084 8.8e-10 67.4 61 55.7
HPP92_013011 Vanilla planifolia HOM05D002851 ORTHO05D003084 8.8e-10 67.4 129 38.0
Lj3g0007870 Lotus japonicus HOM05D002851 ORTHO05D003084 1.2e-09 67.0 71 50.7
AL7G23000 Arabidopsis lyrata HOM05D002851 ORTHO05D003084 1.5e-09 66.6 95 45.3
Carub.0007s1114 Capsella rubella HOM05D002851 ORTHO05D003084 1.5e-09 66.6 91 46.2
TAR383G0978 Trochodendron aralioides HOM05D002851 ORTHO05D003084 1.5e-09 66.6 112 43.8
QL02p063487 Quercus lobata HOM05D002851 ORTHO05D003084 2.0e-09 66.2 57 59.6
Dinv36731 Davidia involucrata HOM05D002851 ORTHO05D003084 2.6e-09 65.9 108 43.5
HanXRQChr12g0355311 Helianthus annuus HOM05D002851 ORTHO05D003084 2.6e-09 65.9 60 58.3
PSO210G0738 Papaver somniferum HOM05D002851 ORTHO05D003084 2.6e-09 65.9 128 39.8
AT4G29400 Arabidopsis thaliana HOM05D002851 ORTHO05D003084 3.4e-09 65.5 74 55.4
ECA234G3685 Erigeron canadensis HOM05D002851 ORTHO05D003084 3.4e-09 65.5 60 58.3
PSO210G6301 Papaver somniferum HOM05D002851 ORTHO05D003084 3.4e-09 65.5 128 39.8
Phvul.006G061200 Phaseolus vulgaris HOM05D002851 ORTHO05D003084 5.7e-09 64.7 84 45.2
CARHR237220 Cardamine hirsuta HOM05D002851 ORTHO05D003084 7.5e-09 64.3 46 63.0
C01p10100 Brassica napus HOM05D002851 ORTHO05D003084 9.8e-09 63.9 89 46.1
BraA01t00813Z Brassica rapa HOM05D002851 ORTHO05D003084 1.7e-08 63.2 89 42.7
Glyma.08G230800 Glycine max HOM05D002851 ORTHO05D003084 2.2e-08 62.8 60 51.7
Nn8g38946 Nelumbo nucifera HOM05D002851 ORTHO05D003084 4.9e-08 61.6 46 60.9
Sp7g27280 Schrenkiella parvula HOM05D002851 ORTHO05D003084 1.1e-07 60.5 92 43.5
Zm00001eb356760 Zea mays HOM05D002851 ORTHO05D003084 1.4e-07 60.1 125 36.0
ATR0789G028 Amborella trichopoda HOM05D002851 ORTHO05D003084 3.1e-07 58.9 122 35.2
Glyma.09G078300 Glycine max HOM05D002851 ORTHO05D003084 2.0e-06 56.2 40 65.0
Os01g0558800 Oryza sativa ssp. japonica HOM05D002851 ORTHO05D003084 2.7e-06 55.8 109 34.9
Duzib168G0811 Durio zibethinus HOM05D002851 ORTHO05D003084 5.9e-06 54.7 72 44.4


User provided reference genes

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