Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 7.7e-61 236.9 114 100.0
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 9.8e-56 219.9 117 93.2
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.6e-53 212.6 117 88.9
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.5e-53 211.5 117 88.0
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 4.6e-53 211.1 117 88.0
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.7e-52 209.1 117 87.2
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.6e-52 206.8 117 86.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 5.2e-49 197.6 117 79.5
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 8.9e-49 196.8 117 77.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.2e-47 192.2 117 77.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.4e-46 189.5 117 77.8
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.7e-44 182.6 117 76.1
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 5.0e-44 181.0 113 77.0
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 8.6e-44 180.3 117 74.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.9e-43 179.1 117 75.2
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.5e-43 178.7 117 73.5
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 9.5e-43 176.8 117 67.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.2e-42 176.4 117 70.9
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.1e-42 175.6 117 68.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 6.2e-42 174.1 117 70.9
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.1e-41 173.3 117 70.1
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.4e-41 172.9 114 70.2
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 2.3e-41 172.2 117 68.4
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 6.8e-41 170.6 117 69.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 8.9e-41 170.2 117 69.2
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.5e-40 169.5 117 67.5
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.5e-40 169.5 117 69.2
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.5e-40 169.5 117 67.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.0e-40 169.1 117 67.5
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 7.5e-40 167.2 117 69.2
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 9.8e-40 166.8 117 66.7
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.3e-39 166.4 117 65.0
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 4.9e-39 164.5 117 68.4
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 4.9e-39 164.5 116 68.1
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.1e-38 163.3 117 67.5
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.4e-38 162.9 117 62.4
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.9e-38 162.5 117 65.8
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.9e-38 162.5 117 65.8
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 1.9e-38 162.5 117 65.8
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.4e-38 162.2 106 69.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 3.2e-38 161.8 117 65.0
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 5.4e-38 161.0 115 66.1
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 5.4e-38 161.0 115 66.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 7.1e-38 160.6 117 64.1
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 7.1e-38 160.6 112 66.1
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 7.1e-38 160.6 115 65.2
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 9.2e-38 160.2 106 69.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.1e-37 159.1 116 62.1
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.7e-37 158.7 116 65.5
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 7.8e-37 157.1 117 65.8
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.3e-36 156.4 117 61.5
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.0e-36 155.2 117 64.1
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 6.6e-36 154.1 117 67.5
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.1e-35 153.3 116 63.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.1e-35 153.3 117 64.1
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.5e-35 152.9 114 60.5
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.5e-35 152.9 116 64.7
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.2e-34 149.8 117 63.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.2e-34 149.8 115 60.9
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.2e-34 149.8 116 63.8
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.8e-34 148.7 117 60.7
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 4.7e-34 147.9 116 62.1
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.1e-33 146.7 115 63.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.8e-33 146.0 109 62.4
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.3e-33 145.6 115 59.1
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.1e-33 145.2 115 60.0
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.0e-33 144.8 116 60.3
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 4.0e-33 144.8 109 62.4
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 5.2e-33 144.4 117 55.6
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 6.8e-33 144.1 116 59.5
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.0e-32 142.5 112 60.7
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.6e-32 142.1 116 58.6
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.4e-32 141.7 112 59.8
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 3.4e-32 141.7 109 60.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 5.8e-32 141.0 115 57.4
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 9.9e-32 140.2 115 57.4
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 9.9e-32 140.2 113 57.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 9.9e-32 140.2 113 57.5
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 9.9e-32 140.2 113 57.5
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.3e-31 139.8 115 56.5
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-31 139.8 115 56.5
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.7e-31 139.4 115 54.8
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-31 139.4 115 56.5
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-31 139.4 115 56.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.2e-31 139.0 115 56.5
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.9e-31 138.7 115 56.5
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 4.9e-31 137.9 115 55.7
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 6.4e-31 137.5 115 56.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 8.4e-31 137.1 109 57.8
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.1e-30 136.7 115 55.7
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.4e-30 136.3 115 56.5
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.4e-30 136.3 115 56.5
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.4e-30 136.3 112 57.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.9e-30 136.0 115 57.4
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 2.4e-30 135.6 116 58.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 2.4e-30 135.6 115 56.5
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 5.4e-30 134.4 115 56.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 9.2e-30 133.7 115 54.8
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.6e-29 131.3 108 56.5
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 6.0e-29 131.0 107 54.2
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 7.8e-29 130.6 109 55.0
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.0e-28 130.2 111 55.9
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-26 122.9 117 52.1
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-25 120.2 111 53.2
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.4e-25 119.0 90 57.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.4e-25 119.0 90 57.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.4e-25 119.0 90 57.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.2e-25 117.9 109 49.5
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 8.9e-25 117.1 94 54.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 8.9e-25 117.1 106 52.8
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.5e-24 116.3 112 49.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.6e-24 115.5 106 51.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 3.4e-24 115.2 111 47.7
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.1e-22 110.2 90 56.7
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 9.3e-22 107.1 100 52.0
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.6e-21 106.3 100 49.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 3.5e-21 105.1 105 46.7
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.3e-20 103.2 93 52.7
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.1e-20 101.3 117 50.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.1e-14 83.6 99 42.4
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.1e-14 83.6 110 40.0
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 4.2e-14 81.6 97 38.1
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.6e-13 79.7 97 44.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.6e-11 71.2 48 60.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.3e-10 70.1 81 45.7
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 5.3e-09 64.7 88 39.8
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 9.0e-09 63.9 88 39.8
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 6.4e-07 57.8 39 64.1


User provided reference genes

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