Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.5e-106 388.3 194 100.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-102 376.3 194 96.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-102 376.3 194 96.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.1e-102 375.2 194 96.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.2e-100 369.0 202 93.1
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.5e-100 367.5 206 91.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 6.3e-95 350.9 194 89.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.1e-94 348.6 194 89.7
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.7e-92 342.8 194 87.1
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.9e-91 339.3 197 84.3
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-91 337.0 175 96.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.6e-90 335.1 197 83.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.8e-89 332.8 194 82.5
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 84.5
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 8.8e-89 330.5 194 83.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-88 330.1 194 82.5
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 3.3e-88 328.6 194 82.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.3e-88 328.2 194 81.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.4e-88 327.4 194 82.5
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 82.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.8e-87 324.7 192 82.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 80.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 82.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.3e-86 321.2 194 81.4
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.3e-86 321.2 198 79.3
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 81.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 9.1e-86 320.5 195 82.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.6e-85 318.9 195 81.5
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 80.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.5e-85 318.2 195 80.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 80.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.7e-84 316.2 192 80.7
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.7e-84 316.2 198 77.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.2e-84 315.8 195 80.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.2e-84 315.8 194 80.4
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.8e-84 315.1 194 79.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 77.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 79.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 8.5e-84 313.9 195 79.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.1e-83 313.5 198 80.3
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 77.8
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 197 77.7
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 79.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.5e-83 312.4 199 75.4
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.5e-83 312.4 198 78.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 77.8
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.5e-83 311.2 194 76.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.5e-83 311.2 201 75.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 5.5e-83 311.2 201 76.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.2e-83 310.8 195 79.5
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 7.2e-83 310.8 194 77.3
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.2e-83 310.8 203 74.9
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.4e-83 310.5 202 75.2
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-82 310.1 201 76.1
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 78.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-82 309.7 195 76.9
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.6e-82 309.7 196 77.0
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.1e-82 309.3 197 77.2
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 199 76.4
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.7e-82 308.9 194 78.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 6.1e-82 307.8 197 76.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 202 73.8
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-81 306.6 193 77.7
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.4e-81 306.6 197 76.1
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.8e-81 306.2 194 77.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.3e-81 305.8 198 74.2
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.3e-81 305.8 194 76.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.0e-81 305.4 193 79.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.0e-81 305.4 196 77.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.0e-81 305.4 195 77.4
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.0e-81 305.4 194 76.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.0e-81 305.4 194 76.3
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 3.9e-81 305.1 201 74.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 6.7e-81 304.3 194 77.3
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 77.8
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 77.3
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.1e-80 303.5 199 74.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 75.8
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.1e-80 303.5 201 73.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.1e-80 303.5 200 75.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 76.3
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.1e-80 303.5 196 76.0
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 196 76.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 75.8
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 5.7e-80 301.2 197 75.1
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.3e-79 300.1 197 75.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 197 75.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 201 72.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 201 72.1
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-79 299.3 197 75.6
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.2e-79 299.3 197 75.6
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.2e-79 299.3 196 76.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.2e-79 299.3 201 73.1
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-79 298.5 197 74.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.7e-79 298.5 204 73.0
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 8.2e-79 297.4 175 83.4
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-78 296.6 210 71.0
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.1e-78 295.0 198 75.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 4.1e-78 295.0 200 74.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 4.1e-78 295.0 194 75.8
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 4.1e-78 295.0 192 76.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.3e-78 294.7 197 73.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 9.1e-78 293.9 195 75.9
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.6e-77 293.1 186 77.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.6e-77 293.1 198 74.7
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.6e-77 293.1 194 76.8
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.6e-77 292.4 200 73.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.5e-77 292.0 200 73.5
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.5e-77 292.0 194 74.7
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.7e-77 290.8 217 67.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.2e-76 289.3 202 73.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.8e-76 288.5 198 74.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 6.5e-76 287.7 197 73.1
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 6.5e-76 287.7 194 74.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.5e-76 287.3 243 63.0
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-75 286.6 196 70.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 4.2e-75 285.0 192 71.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.2e-74 283.5 176 79.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.1e-74 282.7 211 70.6
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.1e-74 281.2 198 73.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.3e-73 279.3 193 69.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 3.0e-73 278.9 223 65.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.0e-73 278.5 198 71.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.2e-73 278.1 180 76.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.6e-72 275.8 204 71.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 7.5e-72 274.2 193 68.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-71 273.5 189 71.4
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.4e-70 270.0 188 70.2
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.4e-70 270.0 201 69.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.0e-69 266.2 215 65.1
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.5e-69 265.4 183 69.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 5.9e-69 264.6 194 69.1
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.5e-67 260.0 185 68.1
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-66 256.9 213 62.9
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.7e-66 255.8 233 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.4e-65 253.4 181 68.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 7.5e-64 247.7 190 67.4
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.3e-63 246.9 181 68.0
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.4e-62 243.4 194 65.5
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.5e-61 238.8 203 59.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 6.5e-60 234.6 179 68.2
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 8.8e-57 224.2 205 60.5
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 3.8e-52 208.8 154 67.5
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.8e-49 199.9 116 83.6
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.8e-49 198.0 120 85.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 4.1e-46 188.7 177 56.5
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.0e-40 169.9 99 87.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.0e-40 169.9 99 85.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 3.7e-39 165.6 188 54.3
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.0e-38 161.4 106 78.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.0e-36 156.0 97 72.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.1e-29 133.3 79 74.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.7e-29 132.9 95 72.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.3e-28 129.8 70 91.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 5.1e-28 128.6 199 44.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.5e-27 127.1 71 74.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.5e-27 124.4 105 64.8
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 9.9e-24 114.4 190 38.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.7e-23 113.6 192 37.5
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-21 107.1 100 63.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 8.6e-20 101.3 192 41.1
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.7e-18 95.5 71 60.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 6.2e-18 95.1 192 38.5
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.1e-17 92.8 62 67.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.5e-16 90.5 67 61.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.6e-16 89.7 65 64.6
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 3.2e-14 82.8 167 34.1
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-13 80.1 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.5e-13 79.3 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-11 73.2 61 57.4
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.5e-08 63.9 70 51.4


User provided reference genes

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