Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0093321 Rosa chinensis HOM05D007811 ORTHO05D009888 0.0e+00 1373.2 693 100.0
FAN19G2727 Fragaria x ananassa HOM05D007811 ORTHO05D009888 0.0e+00 1194.1 694 87.5
FvH4_1g07420 Fragaria vesca HOM05D007811 ORTHO05D009888 0.0e+00 1186.8 694 87.0
FAN26G0113 Fragaria x ananassa HOM05D007811 ORTHO05D009888 0.0e+00 1181.0 694 86.9
FAN23G0562 Fragaria x ananassa HOM05D007811 ORTHO05D009888 0.0e+00 1172.1 693 86.4
FAN28G1627 Fragaria x ananassa HOM05D007811 ORTHO05D009888 0.0e+00 1142.1 688 85.5
FAN26G2623 Fragaria x ananassa HOM05D007811 ORTHO05D009888 4.1e-306 1054.3 619 86.6
Prupe.7G209900 Prunus persica HOM05D007811 ORTHO05D009888 6.6e-280 967.2 695 72.5
MD02G1079300 Malus domestica HOM05D007811 ORTHO05D009888 7.6e-268 927.2 689 71.3
QL02p062715 Quercus lobata HOM05D007811 ORTHO05D009888 5.7e-207 724.9 701 56.1
Haze_25911 Corylus avellana HOM05D007811 ORTHO05D009888 1.4e-197 693.7 700 55.6
Actinidia39718 Actinidia chinensis HOM05D007811 ORTHO05D009888 4.8e-190 668.7 701 53.4
TWI34G0321 Tripterygium wilfordii HOM05D007811 ORTHO05D009888 9.1e-189 664.5 702 53.0
Ciclev10010815m.g Citrus clementina HOM05D007811 ORTHO05D009888 3.6e-185 652.5 702 51.9
TAR383G0833 Trochodendron aralioides HOM05D007811 ORTHO05D009888 1.4e-181 640.6 705 50.8
Cfa003088 Carpinus fangiana HOM05D007811 ORTHO05D009888 1.3e-179 634.0 699 52.5
COL.COLO4_18202 Corchorus olitorius HOM05D007811 ORTHO05D009888 2.5e-178 629.8 696 50.4
Duzib168G1142 Durio zibethinus HOM05D007811 ORTHO05D009888 1.8e-176 623.6 694 50.4
Potri.006G144600 Populus trichocarpa HOM05D007811 ORTHO05D009888 6.4e-174 615.1 696 51.4
Sabra06G0113100 Salix brachista HOM05D007811 ORTHO05D009888 1.0e-171 607.8 693 50.6
Sabra06G0114400 Salix brachista HOM05D007811 ORTHO05D009888 1.0e-171 607.8 693 50.6
CiPaw.03G216500 Carya illinoinensis HOM05D007811 ORTHO05D009888 3.9e-171 605.9 633 51.7
CANSAT56G0268 Cannabis sativa HOM05D007811 ORTHO05D009888 6.2e-169 598.6 691 50.9
Gohir.D07G011150 Gossypium hirsutum HOM05D007811 ORTHO05D009888 6.2e-169 598.6 699 50.2
Gorai.001G011700 Gossypium raimondii HOM05D007811 ORTHO05D009888 6.2e-169 598.6 699 50.2
Gohir.A07G011000 Gossypium hirsutum HOM05D007811 ORTHO05D009888 1.4e-168 597.4 700 50.0
GSVIVG01015202001 Vitis vinifera HOM05D007811 ORTHO05D009888 1.0e-163 581.3 693 49.6
Atru.chr7.1587 Acer truncatum HOM05D007811 ORTHO05D009888 1.7e-163 580.5 632 50.9
Manes.03G033600 Manihot esculenta HOM05D007811 ORTHO05D009888 1.7e-163 580.5 687 49.6
Hma1.2p1_0798F.1_g219820 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 3.0e-163 579.7 692 49.4
Dinv42318 Davidia involucrata HOM05D007811 ORTHO05D009888 3.4e-159 566.2 565 52.7
Hma1.2p1_2664F.1_g326430 Hydrangea macrophylla HOM05D007811 ORTHO05D009888 5.4e-157 558.9 660 49.8
Thecc.09G089600 Theobroma cacao HOM05D007811 ORTHO05D009888 5.1e-155 552.4 576 51.7
DCAR_032238 Daucus carota HOM05D007811 ORTHO05D009888 5.6e-154 548.9 696 45.4
CANSAT56G0922 Cannabis sativa HOM05D007811 ORTHO05D009888 3.1e-152 543.1 691 47.9
PGSC0003DMG400009724 Solanum tuberosum HOM05D007811 ORTHO05D009888 1.7e-142 510.8 690 42.6
PGR102G3061 Punica granatum HOM05D007811 ORTHO05D009888 1.1e-141 508.1 710 44.1
Nitab4.5_0005634g0040 Nicotiana tabacum HOM05D007811 ORTHO05D009888 8.7e-139 498.4 690 43.0
HanXRQChr12g0354871 Helianthus annuus HOM05D007811 ORTHO05D009888 1.5e-138 497.7 692 42.8
Nitab4.5_0004978g0030 Nicotiana tabacum HOM05D007811 ORTHO05D009888 8.1e-137 491.9 703 41.7
Aqoxy7G04046 Aquilegia oxysepala HOM05D007811 ORTHO05D009888 1.4e-136 491.1 700 43.1
Sopen07g018370 Solanum pennellii HOM05D007811 ORTHO05D009888 1.8e-136 490.7 691 42.0
SalBow6G0727 Salvia bowleyana HOM05D007811 ORTHO05D009888 3.8e-134 483.0 698 41.0
Solyc07g038100.3 Solanum lycopersicum HOM05D007811 ORTHO05D009888 4.9e-134 482.6 691 41.4
SGA_v2.0_scaffold10G05228 Striga asiatica HOM05D007811 ORTHO05D009888 8.4e-134 481.9 712 40.0
Lsat_1_v5_gn_5_142361 Lactuca sativa HOM05D007811 ORTHO05D009888 1.9e-133 480.7 690 42.5
PSO210G1027 Papaver somniferum HOM05D007811 ORTHO05D009888 7.4e-130 468.8 704 40.8
Sc18g0001990 Simmondsia chinensis HOM05D007811 ORTHO05D009888 7.4e-130 468.8 708 41.8
THA.LOC104817755 Tarenaya hassleriana HOM05D007811 ORTHO05D009888 2.8e-129 466.8 688 42.3
BcaB02g08177 Brassica carinata HOM05D007811 ORTHO05D009888 2.4e-128 463.8 687 43.1
MSTRG.19514 Avicennia marina HOM05D007811 ORTHO05D009888 9.0e-128 461.8 723 39.7
C04p32330 Brassica napus HOM05D007811 ORTHO05D009888 1.5e-127 461.1 687 43.5
BolC4t24783H Brassica oleracea HOM05D007811 ORTHO05D009888 1.5e-127 461.1 687 43.7
BcaC02g10146 Brassica carinata HOM05D007811 ORTHO05D009888 3.8e-126 456.4 687 43.2
PSO210G6552 Papaver somniferum HOM05D007811 ORTHO05D009888 7.9e-124 448.7 704 39.8
Thhalv10006501m.g Eutrema salsugineum HOM05D007811 ORTHO05D009888 3.9e-123 446.4 689 41.7
BraA04t15894Z Brassica rapa HOM05D007811 ORTHO05D009888 1.6e-121 441.0 689 42.2
AT3G60310 Arabidopsis thaliana HOM05D007811 ORTHO05D009888 4.8e-121 439.5 691 41.5
A04p01700 Brassica napus HOM05D007811 ORTHO05D009888 1.8e-120 437.6 703 42.0
CARHR170630 Cardamine hirsuta HOM05D007811 ORTHO05D009888 1.8e-120 437.6 690 41.6
AL5G42530 Arabidopsis lyrata HOM05D007811 ORTHO05D009888 2.4e-120 437.2 701 41.2
ECA234G0321 Erigeron canadensis HOM05D007811 ORTHO05D009888 3.1e-120 436.8 700 40.1
Carub.0005s2705 Capsella rubella HOM05D007811 ORTHO05D009888 4.5e-119 433.0 648 42.4
Peaxi162Scf01121g00111 Petunia axillaris HOM05D007811 ORTHO05D009888 1.6e-116 424.5 680 39.4
Nn6g35473 Nelumbo nucifera HOM05D007811 ORTHO05D009888 6.3e-113 412.5 697 38.7
Migut.J00617 Erythranthe guttata HOM05D007811 ORTHO05D009888 4.1e-104 383.3 581 39.2
Cc00_g27490 Coffea canephora HOM05D007811 ORTHO05D009888 4.8e-97 359.8 395 50.4
HPP92_003971 Vanilla planifolia HOM05D007811 ORTHO05D009888 2.6e-95 354.0 714 34.7
ATR0749G017 Amborella trichopoda HOM05D007811 ORTHO05D009888 5.5e-93 346.3 763 33.6
Cpa.g.sc93.35 Carica papaya HOM05D007811 ORTHO05D009888 4.0e-91 340.1 434 44.5
Oeu042653.6 Olea europaea HOM05D007811 ORTHO05D009888 3.8e-86 323.6 696 35.1
Zm00001eb376990 Zea mays HOM05D007811 ORTHO05D009888 1.8e-83 314.7 709 34.0
Eucgr.C03899 Eucalyptus grandis HOM05D007811 ORTHO05D009888 2.7e-79 300.8 436 41.3
MBI01_g21120_MAGBIO Magnolia biondii HOM05D007811 ORTHO05D009888 1.6e-71 275.0 451 39.0
Cpa.g.sc93.36 Carica papaya HOM05D007811 ORTHO05D009888 2.7e-71 274.2 267 57.7
DCAR_028591 Daucus carota HOM05D007811 ORTHO05D009888 9.2e-56 222.6 542 32.8
SEGI_03446 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 5.8e-50 203.4 618 29.0
Cfa003090 Carpinus fangiana HOM05D007811 ORTHO05D009888 1.2e-34 152.5 159 52.2
CDE04G1243 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 4.4e-34 150.6 396 32.6
CAN.G720.2 Capsicum annuum HOM05D007811 ORTHO05D009888 2.1e-31 141.7 211 35.1
SEGI_10589 Sequoiadendron giganteum HOM05D007811 ORTHO05D009888 2.6e-26 124.8 571 24.0
Haze_25909 Corylus avellana HOM05D007811 ORTHO05D009888 5.1e-22 110.5 135 50.4
Mapoly0096s0065 Marchantia polymorpha HOM05D007811 ORTHO05D009888 6.6e-22 110.2 254 32.3
CAN.G720.1 Capsicum annuum HOM05D007811 ORTHO05D009888 1.2e-18 99.4 119 45.4
AagrBONN_evm.TU.Sc2ySwM_344.5247 Anthoceros agrestis HOM05D007811 ORTHO05D009888 1.4e-11 75.9 188 31.9
TAR626G1045 Trochodendron aralioides HOM05D000238 ORTHO05D011431 6.7e-06 57.0 70 41.4
Pp3c11_2160 Physcomitrium patens HOM05D007811 ORTHO05D009888 8.7e-06 56.6 263 28.5


User provided reference genes

Program Settings