Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 1.2e-54 216.1 100 100.0
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 3.1e-53 211.5 100 97.0
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.0e-53 211.1 99 97.0
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.9e-51 204.1 100 93.0
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 2.7e-49 198.4 100 91.0
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 4.3e-47 191.0 94 89.4
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 5.6e-47 190.7 90 95.6
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 5.6e-47 190.7 90 95.6
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 2.8e-46 188.3 95 86.3
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 4.7e-46 187.6 94 88.3
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.4e-45 186.0 86 97.7
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 2.6e-44 181.8 96 82.3
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 5.8e-44 180.6 98 82.7
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 1.3e-43 179.5 92 84.8
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 1.3e-43 179.5 92 84.8
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 1.3e-43 179.5 92 84.8
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 2.9e-43 178.3 93 83.9
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 2.9e-43 178.3 93 83.9
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 2.9e-43 178.3 98 81.6
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 3.7e-43 177.9 93 82.8
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 3.7e-43 177.9 94 84.0
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 4.9e-43 177.6 98 81.6
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 6.4e-43 177.2 94 80.9
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 6.4e-43 177.2 98 81.6
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 6.4e-43 177.2 98 81.6
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 6.4e-43 177.2 93 80.6
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 6.4e-43 177.2 93 80.6
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 1.4e-42 176.0 94 80.9
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 1.4e-42 176.0 92 82.6
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 82.8
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 82.8
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 1.9e-42 175.6 98 79.6
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 1.9e-42 175.6 98 79.6
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 1.9e-42 175.6 98 77.6
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 2.4e-42 175.3 98 79.6
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 2.4e-42 175.3 93 81.7
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 2.4e-42 175.3 93 80.6
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 2.4e-42 175.3 93 81.7
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.2e-42 174.9 93 80.6
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 4.1e-42 174.5 91 82.4
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 4.1e-42 174.5 93 81.7
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 5.4e-42 174.1 93 80.6
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 5.4e-42 174.1 93 80.6
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 7.1e-42 173.7 96 78.1
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.2e-41 172.9 93 81.7
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 1.2e-41 172.9 92 82.6
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 1.6e-41 172.6 98 80.6
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 1.6e-41 172.6 93 79.6
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 2.1e-41 172.2 91 80.2
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 2.7e-41 171.8 98 76.5
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 3.5e-41 171.4 93 77.4
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 3.5e-41 171.4 94 76.6
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 4.6e-41 171.0 98 76.5
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 4.6e-41 171.0 98 76.5
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 4.6e-41 171.0 93 81.7
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 6.0e-41 170.6 89 82.0
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.0e-40 169.9 98 77.6
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 1.0e-40 169.9 93 77.4
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 1.3e-40 169.5 99 74.7
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 1.3e-40 169.5 99 74.7
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 1.7e-40 169.1 98 74.5
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 2.3e-40 168.7 98 74.5
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 2.3e-40 168.7 93 77.4
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 2.3e-40 168.7 98 77.6
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 3.9e-40 167.9 96 69.8
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 3.9e-40 167.9 93 77.4
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 3.9e-40 167.9 93 76.3
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 5.1e-40 167.5 93 78.5
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 5.1e-40 167.5 93 77.4
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 5.1e-40 167.5 93 77.4
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 5.1e-40 167.5 93 74.2
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 8.6e-40 166.8 98 75.5
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 1.1e-39 166.4 89 79.8
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.1e-39 166.4 91 80.2
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 1.1e-39 166.4 92 76.1
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.1e-39 166.4 93 75.3
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 1.5e-39 166.0 98 73.5
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 1.5e-39 166.0 99 72.7
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 1.9e-39 165.6 98 72.4
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.9e-39 165.6 93 74.2
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 3.3e-39 164.9 92 76.1
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 4.3e-39 164.5 113 67.3
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 4.3e-39 164.5 99 72.7
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 5.6e-39 164.1 98 75.5
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 5.6e-39 164.1 93 75.3
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 7.3e-39 163.7 94 74.5
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 9.5e-39 163.3 99 71.7
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.2e-38 162.9 93 74.2
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 2.1e-38 162.2 103 69.9
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 1.1e-37 159.8 98 72.4
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 1.8e-37 159.1 93 74.2
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.4e-37 158.7 93 73.1
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.4e-37 158.7 98 70.4
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 2.4e-37 158.7 98 70.4
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 2.4e-37 158.7 89 74.2
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 2.4e-37 158.7 89 74.2
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.4e-37 158.7 98 73.5
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 4.0e-37 157.9 98 69.4
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 6.8e-37 157.1 115 62.6
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 1.2e-36 156.4 99 70.7
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 4.4e-36 154.5 96 68.8
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 9.9e-36 153.3 99 67.7
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 4.9e-35 151.0 99 68.7
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 1.4e-34 149.4 91 71.4
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 1.4e-34 149.4 93 71.0
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 1.9e-34 149.1 78 80.8
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 3.2e-34 148.3 95 67.4
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 4.2e-34 147.9 95 67.4
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 5.4e-34 147.5 91 69.2
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 5.4e-34 147.5 91 69.2
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 5.4e-34 147.5 91 69.2
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 5.4e-34 147.5 95 67.4
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 7.1e-34 147.1 94 68.1
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 68.1
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 68.1
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 68.1
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 68.1
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 68.1
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-33 146.4 81 77.8
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 2.1e-33 145.6 91 69.2
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 2.7e-33 145.2 91 70.3
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 7.8e-33 143.7 87 67.8
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.6e-32 140.6 104 62.5
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.4e-29 132.9 78 75.6
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 5.3e-29 131.0 80 72.5
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 3.4e-28 128.3 89 62.9
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 9.9e-28 126.7 69 79.7
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 2.4e-26 122.1 74 70.3
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.2e-25 119.8 61 90.2
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 4.6e-25 117.9 74 73.0
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 4.6e-25 117.9 65 75.4
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 3.6e-22 108.2 71 67.6
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 1.2e-20 103.2 61 73.8
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 1.5e-20 102.8 61 73.8
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.9e-16 88.2 68 57.4
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 7.4e-15 84.0 70 50.0
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 6.5e-11 70.9 61 54.1
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 1.9e-10 69.3 36 75.0
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 2.5e-07 58.9 57 45.6


User provided reference genes

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