Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.1e-273 946.0 490 100.0
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.2e-219 766.5 493 81.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 8.7e-218 760.4 493 81.3
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.6e-217 757.7 514 78.6
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.5e-206 721.5 501 76.8
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.3e-159 565.1 499 62.9
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.8e-151 540.0 498 59.8
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.2e-130 468.8 544 51.1
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.0e-125 454.5 524 51.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.9e-125 452.6 514 52.1
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.3e-117 427.6 442 55.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-116 422.5 458 49.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.2e-115 421.0 463 51.6
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.1e-115 420.2 499 46.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.4e-112 408.3 495 46.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.7e-110 403.3 434 50.7
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 6.0e-110 402.1 495 44.8
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.3e-109 400.2 486 46.9
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.6e-108 395.6 494 46.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 5.6e-108 395.6 524 46.2
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 9.6e-108 394.8 465 46.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.1e-106 391.3 494 46.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.4e-106 390.2 484 44.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.0e-106 389.4 484 46.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 5.2e-106 389.0 471 46.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.0e-105 387.1 451 48.1
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.8e-105 385.6 483 46.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.6e-105 385.2 547 44.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.6e-105 385.2 547 44.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.9e-105 384.8 477 44.4
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.4e-104 382.1 469 47.8
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.1e-103 381.3 520 43.8
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-103 381.3 470 45.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.2e-103 379.8 472 46.4
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.2e-103 379.4 499 45.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.6e-102 375.9 241 79.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 7.8e-102 375.2 465 46.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 7.8e-102 375.2 468 45.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.0e-101 374.8 481 47.6
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 6.6e-101 372.1 484 46.1
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.0e-97 360.5 470 43.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 5.8e-97 359.0 470 43.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.7e-96 357.5 480 46.7
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.4e-96 355.5 433 46.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 6.4e-96 355.5 501 44.5
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 8.4e-96 355.1 482 45.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.0e-93 348.2 484 42.8
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 4.3e-92 342.8 473 42.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.5e-89 332.8 485 42.1
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.2e-87 326.2 477 43.8
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.6e-86 324.3 498 42.2
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 3.9e-85 319.7 477 41.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.3e-84 316.2 516 39.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.6e-83 314.3 477 38.8
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 3.1e-82 310.1 492 40.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.3e-82 309.3 482 38.4
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.3e-82 309.3 490 41.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-80 304.7 464 41.8
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.2e-80 303.9 492 40.7
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 9.3e-79 298.5 470 38.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 7.4e-76 288.9 481 39.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-73 281.6 493 38.7
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.6e-73 278.9 504 38.3
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.5e-72 275.8 486 36.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-70 271.6 492 37.2
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 4.6e-70 269.6 161 85.1
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 6.1e-70 269.2 161 85.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.3e-68 263.1 477 38.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-67 261.5 281 48.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.4e-66 257.3 267 50.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.1e-66 256.5 499 38.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.3e-66 256.1 256 51.6
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.0e-64 251.9 482 35.3
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-64 251.5 484 38.0
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.5e-63 247.3 480 35.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.6e-62 244.6 467 36.6
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.7e-62 243.8 489 35.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.7e-62 243.8 493 34.7
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.6e-62 243.0 410 36.8
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.6e-62 243.0 452 36.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.0e-61 241.9 454 35.5
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.0e-61 240.4 505 34.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 6.7e-61 239.2 393 36.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 8.8e-61 238.8 483 35.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.5e-60 238.0 354 39.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.5e-60 237.3 508 35.0
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 4.8e-59 233.0 389 37.0
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.4e-58 231.5 492 33.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.8e-58 231.1 488 34.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 5.3e-58 229.6 367 38.7
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-57 228.0 366 39.3
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-57 227.6 383 36.3
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.6e-57 227.3 366 39.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.4e-57 226.9 404 36.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.5e-57 226.5 474 33.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 5.9e-57 226.1 437 35.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.0e-56 225.3 484 33.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.3e-56 224.9 419 36.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 5.0e-56 223.0 473 33.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.2e-55 220.3 413 35.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 7.2e-55 219.2 489 33.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 7.2e-55 219.2 270 46.3
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 7.2e-55 219.2 391 37.1
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.2e-54 218.4 433 36.7
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 3.6e-54 216.9 493 32.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.9e-54 215.7 481 33.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.9e-54 215.7 481 33.5
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.0e-53 215.3 488 33.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.8e-53 214.5 401 34.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.8e-53 214.5 469 32.8
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.0e-53 213.8 502 32.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.9e-53 213.4 483 32.9
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.9e-53 213.4 480 32.1
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.9e-53 213.4 409 36.2
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 5.1e-53 213.0 406 34.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.3e-52 210.3 486 31.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 9.7e-52 208.8 444 33.3
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.3e-51 208.4 262 45.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 6.3e-51 206.1 468 36.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.3e-50 203.0 489 32.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.6e-49 200.7 473 30.4
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.9e-49 199.5 521 31.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.3e-48 198.4 452 32.5
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.2e-48 197.6 514 29.0
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.2e-48 197.6 282 40.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 8.5e-48 195.7 419 31.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 9.4e-47 192.2 409 33.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-46 191.8 444 34.2
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.6e-46 190.3 411 31.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 4.7e-46 189.9 485 30.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.0e-45 187.2 272 41.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 9.7e-44 182.2 538 27.1
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.1e-42 178.7 448 32.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 5.3e-42 176.4 534 28.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.0e-41 174.5 457 33.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.7e-40 171.4 228 43.9
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.5e-39 167.5 460 30.7
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.2e-39 167.2 561 27.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.0e-37 160.2 352 33.8
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.8e-37 159.5 480 28.1
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.8e-37 159.1 257 39.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.5e-36 158.3 443 31.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.0e-36 157.9 290 36.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 9.8e-36 155.6 224 42.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.1e-34 152.1 386 31.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.4e-34 151.8 433 30.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.1e-34 150.6 205 41.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 9.1e-34 149.1 217 41.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.5e-33 147.1 439 32.6
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 4.5e-33 146.7 250 40.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 4.5e-33 146.7 246 39.0
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 5.9e-33 146.4 437 29.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 7.7e-33 146.0 430 29.3
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 4.0e-29 133.7 387 29.7
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.8e-29 132.9 354 30.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.8e-29 132.9 224 38.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.6e-28 131.0 355 29.9
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.4e-28 130.6 387 29.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 4.4e-28 130.2 359 30.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.5e-25 120.6 316 31.0
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.2e-22 112.1 129 44.2
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.7e-22 110.2 240 30.4
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 6.8e-21 106.3 268 29.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.7e-19 101.7 246 34.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 3.7e-19 100.5 225 33.8
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 6.4e-19 99.8 238 31.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.1e-18 99.0 257 32.3
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.0e-17 94.7 237 33.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 5.9e-17 93.2 145 38.6
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-14 84.0 103 37.9
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.2e-13 80.1 120 39.2
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 8.9e-13 79.3 157 33.1
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 5.8e-12 76.6 528 21.8
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.3e-11 75.5 112 37.5
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 1.2e-06 58.9 493 23.1


User provided reference genes

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