Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0092761 Rosa chinensis HOM05D000522 ORTHO05D004380 8.0e-177 623.6 311 100.0
RcHm_v2.0_Chr2g0092831 Rosa chinensis HOM05D000522 ORTHO05D004380 8.0e-177 623.6 311 100.0
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 1.7e-62 243.8 326 47.9
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.3e-62 243.4 326 47.9
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 2.3e-62 243.4 326 48.2
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 3.9e-62 242.7 326 47.2
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.6e-62 241.9 326 47.9
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.6e-62 241.9 326 47.9
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-61 240.7 325 47.1
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 2.6e-58 229.9 326 44.5
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 2.6e-58 229.9 326 44.8
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 1.7e-57 227.3 326 44.2
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 2.0e-50 203.8 326 40.5
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 5.8e-50 202.2 326 40.8
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 9.8e-50 201.4 326 42.0
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 8.3e-49 198.4 326 40.8
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 1.9e-48 197.2 326 39.6
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 4.1e-48 196.1 326 39.9
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 4.1e-48 196.1 326 39.9
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 7.1e-48 195.3 326 39.6
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 7.1e-48 195.3 326 39.6
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 9.2e-48 194.9 326 39.9
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 2.1e-47 193.7 326 39.6
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 2.7e-47 193.4 326 39.0
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 7.8e-47 191.8 326 39.3
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 1.3e-46 191.0 326 38.7
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 3.0e-46 189.9 327 39.4
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 6.6e-46 188.7 326 39.3
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 8.6e-46 188.3 325 39.1
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 1.5e-45 187.6 325 38.5
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 1.9e-45 187.2 325 39.1
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 2.5e-45 186.8 326 37.7
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.5e-45 186.8 326 37.7
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 3.3e-45 186.4 326 38.7
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 3.3e-45 186.4 326 37.7
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 3.3e-45 186.4 326 37.7
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 4.3e-45 186.0 326 38.7
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 4.3e-45 186.0 326 39.0
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 5.6e-45 185.7 326 38.3
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 9.5e-45 184.9 326 38.7
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 9.5e-45 184.9 325 37.8
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 9.5e-45 184.9 327 37.6
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 9.5e-45 184.9 326 38.3
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 1.2e-44 184.5 326 37.4
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 1.2e-44 184.5 326 38.0
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 1.6e-44 184.1 326 37.1
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.6e-44 184.1 326 38.3
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 1.6e-44 184.1 326 38.3
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 1.6e-44 184.1 326 37.7
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 1.6e-44 184.1 326 37.7
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 38.3
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 37.1
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 37.1
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 38.7
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 38.0
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 2.1e-44 183.7 326 37.7
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 2.8e-44 183.3 326 37.4
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 2.8e-44 183.3 326 37.7
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 3.6e-44 183.0 326 38.0
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 4.7e-44 182.6 326 35.9
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 4.7e-44 182.6 326 37.1
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 4.7e-44 182.6 326 37.1
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 4.7e-44 182.6 326 37.1
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 4.7e-44 182.6 326 37.1
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 6.2e-44 182.2 326 38.7
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 8.1e-44 181.8 326 38.3
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.1e-43 181.4 326 37.7
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 1.8e-43 180.6 326 37.1
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 2.3e-43 180.3 326 36.8
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 2.3e-43 180.3 326 37.4
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 4.0e-43 179.5 326 36.8
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 5.2e-43 179.1 326 36.8
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 5.2e-43 179.1 326 38.0
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 6.8e-43 178.7 326 37.7
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 6.8e-43 178.7 326 37.1
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 6.8e-43 178.7 326 37.1
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 8.9e-43 178.3 325 37.8
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 1.2e-42 177.9 326 37.1
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 1.2e-42 177.9 326 37.4
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 1.2e-42 177.9 326 36.2
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 2.6e-42 176.8 326 37.1
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 2.6e-42 176.8 326 37.1
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 2.6e-42 176.8 326 37.1
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 7.6e-42 175.3 326 37.1
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 7.6e-42 175.3 324 37.3
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 9.9e-42 174.9 326 36.8
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 9.9e-42 174.9 326 37.1
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 9.9e-42 174.9 325 36.6
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 9.9e-42 174.9 325 36.6
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.3e-41 174.5 326 37.1
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 2.2e-41 173.7 326 36.8
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 2.9e-41 173.3 339 37.2
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 2.9e-41 173.3 326 36.5
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 3.7e-41 172.9 325 36.0
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 3.7e-41 172.9 326 36.2
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 4.9e-41 172.6 327 36.4
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 8.3e-41 171.8 326 35.3
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 8.3e-41 171.8 326 36.8
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 1.1e-40 171.4 326 36.5
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 1.4e-40 171.0 343 36.2
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 1.4e-40 171.0 326 36.8
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 1.9e-40 170.6 326 35.3
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 1.9e-40 170.6 316 36.4
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 5.4e-40 169.1 326 36.2
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 5.4e-40 169.1 325 35.7
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 7.1e-40 168.7 321 35.8
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 7.1e-40 168.7 324 36.7
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 9.2e-40 168.3 326 36.2
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 1.6e-39 167.5 328 35.7
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 2.1e-39 167.2 325 35.7
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 2.7e-39 166.8 326 34.0
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 2.7e-39 166.8 326 35.3
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 2.7e-39 166.8 325 35.4
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 3.5e-39 166.4 326 34.4
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 7.8e-39 165.2 325 33.2
vmacro11392 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.3e-38 164.5 179 50.3
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 1.7e-38 164.1 326 35.9
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 1.7e-38 164.1 332 35.2
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 5.1e-38 162.5 326 35.0
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 6.6e-38 162.2 326 35.0
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 6.6e-38 162.2 326 34.7
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 8.6e-38 161.8 326 32.8
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 1.1e-37 161.4 211 46.0
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 2.5e-37 160.2 326 34.7
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 9.6e-37 158.3 326 34.0
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 1.2e-36 157.9 326 34.4
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.1e-36 157.1 209 44.0
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.8e-36 156.8 209 43.1
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 3.6e-36 156.4 356 32.9
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 3.6e-36 156.4 260 40.4
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 3.6e-36 156.4 325 32.9
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 4.7e-36 156.0 326 36.2
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 8.1e-36 155.2 326 33.1
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 1.8e-35 154.1 224 43.3
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 2.4e-35 153.7 325 33.8
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 3.1e-35 153.3 325 33.2
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 3.1e-35 153.3 326 32.8
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 4.0e-35 152.9 326 32.2
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 6.8e-35 152.1 326 34.4
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 1.2e-34 151.4 326 32.5
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 4.4e-34 149.4 326 32.2
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 4.9e-33 146.0 260 37.3
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 6.4e-33 145.6 209 42.6
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 6.4e-33 145.6 326 31.3
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 1.1e-32 144.8 326 33.1
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.9e-32 144.1 260 36.9
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.4e-32 142.5 217 41.0
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 2.1e-31 140.6 326 32.2
vmacro11394 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.3e-28 131.3 175 45.1
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.1e-27 128.3 206 40.3
SEGI_36085 Sequoiadendron giganteum HOM05D000522 ORTHO05D004380 3.4e-26 123.2 155 44.5
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 3.4e-26 123.2 309 34.0
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 6.4e-25 119.0 166 44.6
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 2.7e-23 113.6 315 28.6
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 4.3e-21 106.3 317 27.4
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 1.3e-20 104.8 311 28.6
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 2.8e-20 103.6 207 34.8
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 6.2e-20 102.4 279 28.0
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 5.3e-19 99.4 320 26.2
MD02G1052600 Malus domestica HOM05D000522 ORTHO05D247921 2.6e-18 97.1 134 43.3
vmacro08116 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.6e-18 97.1 288 29.2
CSS0005666 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D033858 3.4e-18 96.7 107 51.4
vmacro06196 Vaccinium macrocarpon HOM05D000522 ORTHO05D033858 3.5e-15 86.7 155 38.7
FvH4_1g04450 Fragaria vesca HOM05D000522 ORTHO05D004380 1.1e-13 81.6 84 57.1
Oeu055871.1 Olea europaea HOM05D000522 ORTHO05D004380 1.5e-13 81.3 169 36.7
MD02G1053900 Malus domestica HOM05D000522 ORTHO05D004380 1.3e-12 78.2 153 35.3
vmacro08382 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 8.1e-12 75.5 100 46.0
HanXRQChr10g0317691 Helianthus annuus HOM05D000522 ORTHO05D024576 2.2e-09 67.4 104 39.4
Rhsim03G0245800 Rhododendron simsii HOM05D000007 ORTHO05D013648 2.2e-09 67.4 150 36.7
HanXRQChr13g0424741 Helianthus annuus HOM05D000522 ORTHO05D033858 6.5e-09 65.9 38 81.6
HPP92_023283 Vanilla planifolia HOM05D000522 ORTHO05D000565 3.2e-08 63.5 230 27.8
PGSC0003DMG400022177 Solanum tuberosum HOM05D000522 ORTHO05D000565 1.0e-06 58.5 221 25.3
MD02G1054700 Malus domestica HOM05D000522 ORTHO05D245521 3.9e-06 56.6 51 56.9
PGSC0003DMG400015921 Solanum tuberosum HOM05D000522 ORTHO05D000565 5.1e-06 56.2 165 26.7


User provided reference genes

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