Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 5.4e-23 110.2 56 100.0
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-18 95.5 53 90.6
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.4e-18 95.5 53 90.6
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.0e-18 94.0 53 88.7
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 6.8e-18 93.2 53 88.7
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 6.8e-18 93.2 53 88.7
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 2.3e-13 78.2 43 83.7
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 6.6e-13 76.6 46 80.4
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 8.6e-13 76.3 54 66.7
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 1.5e-12 75.5 44 77.3
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 1.9e-12 75.1 43 76.7
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 4.3e-12 73.9 43 79.1
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 7.3e-12 73.2 47 72.3
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.2e-11 72.4 49 69.4
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.2e-11 72.4 49 69.4
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.2e-11 72.4 49 69.4
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.2e-11 72.4 42 76.2
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.6e-11 72.0 48 68.8
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.6e-11 72.0 42 76.2
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 2.1e-11 71.6 52 63.5
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 6.2e-11 70.1 48 68.8
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 6.2e-11 70.1 42 78.6
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 8.0e-11 69.7 42 78.6
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.1e-10 69.3 44 70.5
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 1.1e-10 69.3 42 71.4
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 1.1e-10 69.3 43 72.1
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 1.1e-10 69.3 41 73.2
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.1e-10 69.3 42 73.8
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.4e-10 68.9 44 68.2
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.4e-10 68.9 44 68.2
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 1.4e-10 68.9 49 73.5
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 1.4e-10 68.9 39 82.1
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.8e-10 68.6 48 66.7
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 1.8e-10 68.6 42 71.4
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 2.3e-10 68.2 52 63.5
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 2.3e-10 68.2 42 66.7
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 2.3e-10 68.2 44 63.6
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 3.1e-10 67.8 42 71.4
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 5.2e-10 67.0 44 70.5
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 5.2e-10 67.0 42 69.0
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 1.2e-09 65.9 42 69.0
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 1.5e-09 65.5 48 60.4
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 2.0e-09 65.1 47 61.7
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.6e-09 64.7 44 65.9
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 2.6e-09 64.7 50 62.0
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 4.4e-09 63.9 42 73.8
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 5.8e-09 63.5 46 65.2
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.3e-08 62.4 59 61.0
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 1.3e-08 62.4 47 61.7
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 3.7e-08 60.8 49 57.1
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 3.7e-08 60.8 46 63.0
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 4.9e-08 60.5 44 61.4
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 6.4e-08 60.1 47 55.3
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 8.3e-08 59.7 46 56.5
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 1.1e-07 59.3 42 59.5
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 1.4e-07 58.9 52 55.8
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 3.2e-07 57.8 45 57.8
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 5.4e-07 57.0 42 59.5
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 9.2e-07 56.2 36 66.7
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 9.2e-07 56.2 40 60.0
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 2.1e-06 55.1 51 51.0
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 2.1e-06 55.1 40 57.5
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 2.7e-06 54.7 36 63.9
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 3.5e-06 54.3 44 54.5


User provided reference genes

Program Settings