Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 7.0e-148 527.3 277 100.0
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 2.1e-107 392.9 276 79.3
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 1.3e-106 390.2 276 78.3
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.7e-106 389.8 276 77.9
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 4.3e-105 385.2 276 77.5
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 9.5e-105 384.0 276 77.5
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 4.7e-104 381.7 276 77.2
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.1e-103 380.6 251 82.1
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 8.6e-98 360.9 251 77.3
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 6.8e-95 351.3 251 75.3
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 4.9e-93 345.1 259 70.3
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 1.9e-92 343.2 251 73.3
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 3.5e-91 339.0 277 66.1
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 7.8e-91 337.8 251 72.5
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 2.3e-90 336.3 276 67.4
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 6.6e-90 334.7 251 70.9
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 1.5e-89 333.6 251 70.9
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 1.9e-89 333.2 277 66.1
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 3.3e-89 332.4 277 65.3
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 9.6e-89 330.9 279 65.6
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 1.3e-88 330.5 277 65.3
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 2.8e-88 329.3 279 64.9
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 3.6e-88 328.9 277 64.6
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.1e-87 327.4 277 64.6
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.1e-87 325.9 279 64.2
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 4.0e-87 325.5 265 66.0
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 5.3e-87 325.1 279 64.2
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 5.3e-87 325.1 279 63.1
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 9.0e-87 324.3 277 63.2
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 9.0e-87 324.3 277 63.2
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 1.5e-86 323.6 265 65.3
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.0e-86 323.2 277 64.3
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 3.4e-86 322.4 277 62.5
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 3.4e-86 322.4 277 63.9
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 3.4e-86 322.4 277 62.1
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 4.4e-86 322.0 265 65.3
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 4.4e-86 322.0 277 60.6
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 5.8e-86 321.6 277 64.6
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 9.9e-86 320.9 265 64.9
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 2.9e-85 319.3 277 59.2
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 2.9e-85 319.3 277 59.2
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 2.9e-85 319.3 277 62.5
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 2.9e-85 319.3 277 61.4
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 2.9e-85 319.3 277 61.4
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 2.9e-85 319.3 265 64.9
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 3.8e-85 318.9 251 66.9
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 4.9e-85 318.5 277 62.5
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 4.9e-85 318.5 277 60.3
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 6.4e-85 318.2 277 59.9
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 6.4e-85 318.2 277 59.9
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 6.4e-85 318.2 277 59.9
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 6.4e-85 318.2 265 65.7
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 6.4e-85 318.2 265 65.7
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 6.4e-85 318.2 277 62.8
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 8.4e-85 317.8 277 59.9
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 1.4e-84 317.0 277 59.2
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 1.9e-84 316.6 277 59.6
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.2e-84 315.8 277 59.9
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 3.2e-84 315.8 288 61.8
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 4.2e-84 315.5 277 59.2
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 5.4e-84 315.1 265 65.3
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 7.1e-84 314.7 277 59.6
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 9.3e-84 314.3 277 60.6
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 9.3e-84 314.3 265 64.2
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 1.2e-83 313.9 277 59.2
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 1.6e-83 313.5 265 63.4
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 1.6e-83 313.5 265 63.4
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 3.5e-83 312.4 277 61.7
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 3.5e-83 312.4 277 61.0
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 4.6e-83 312.0 276 60.9
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 4.6e-83 312.0 277 59.9
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 7.9e-83 311.2 277 59.6
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 7.9e-83 311.2 265 64.5
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 8.7e-82 307.8 276 60.5
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 8.7e-82 307.8 251 64.9
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 1.1e-81 307.4 276 62.0
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 1.1e-81 307.4 277 61.4
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.5e-81 307.0 271 62.7
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.6e-80 303.5 277 60.6
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 2.1e-80 303.1 277 60.6
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 2.1e-80 303.1 277 59.2
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 4.8e-80 302.0 265 61.1
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 4.8e-80 302.0 277 59.2
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 4.8e-80 302.0 265 61.9
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 8.1e-80 301.2 273 61.5
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.4e-79 300.4 271 60.9
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 1.4e-79 300.4 276 58.7
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.4e-79 299.7 277 59.2
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 1.5e-78 297.0 279 58.1
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 3.4e-78 295.8 277 58.1
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 5.8e-78 295.0 277 56.7
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 7.6e-78 294.7 277 58.5
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 9.9e-78 294.3 277 58.5
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 8.4e-77 291.2 277 56.7
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 1.1e-76 290.8 277 56.3
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.4e-76 290.4 277 57.8
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 4.2e-76 288.9 277 55.6
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 9.3e-76 287.7 277 55.6
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.2e-75 287.3 277 55.6
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 1.6e-75 287.0 265 59.2
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.7e-75 286.2 279 59.5
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 8.7e-74 281.2 276 56.2
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 5.6e-73 278.5 277 55.6
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.3e-69 267.3 265 54.0
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 8.4e-69 264.6 275 52.4
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 1.9e-68 263.5 277 52.7
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.3e-68 261.2 278 52.2
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 1.8e-66 256.9 227 63.0
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 5.1e-66 255.4 265 53.6
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 8.7e-66 254.6 278 51.4
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.3e-64 250.8 249 54.2
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 1.1e-60 237.7 277 48.7
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.2e-60 235.7 272 50.4
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.2e-59 234.2 279 52.3
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.6e-59 232.6 274 48.5
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 3.6e-59 232.6 215 57.7
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 1.8e-58 230.3 278 47.5
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.5e-57 227.3 277 46.9
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 6.3e-56 221.9 275 45.8
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.9e-52 210.3 207 57.5
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 2.6e-49 199.9 249 44.6
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 2.6e-46 189.9 269 44.2
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 1.8e-39 167.2 124 66.1
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 9.1e-39 164.9 270 39.6
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.0e-37 161.4 112 70.5
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.8e-37 159.5 101 75.2
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.5e-30 136.0 111 55.0
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 6.5e-29 132.1 181 45.3
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 9.8e-25 118.2 135 49.6
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 4.8e-24 115.9 102 62.7
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 6.3e-24 115.5 241 31.5
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.0e-09 67.4 226 27.4
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 1.6e-06 57.8 59 54.2
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.9e-06 55.8 68 51.5
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.9e-06 55.8 35 74.3


User provided reference genes

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