Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.6e-116 423.3 315 100.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-96 355.1 312 89.1
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.3e-91 339.7 312 84.3
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.7e-89 333.6 312 87.2
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.9e-88 330.1 312 86.2
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-88 329.3 312 86.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-88 329.3 312 86.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 9.5e-85 317.8 317 77.0
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.6e-82 309.7 305 81.3
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 7.6e-82 308.1 312 78.8
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.5e-77 293.9 303 67.3
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.3e-77 291.6 315 80.6
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.2e-76 290.8 315 79.7
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 2.1e-76 290.0 315 81.0
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.6e-76 289.3 315 81.0
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 8.1e-76 288.1 291 77.0
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.1e-75 287.7 317 80.1
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.8e-75 287.0 311 81.0
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 9.0e-75 284.6 315 79.7
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.2e-74 284.3 315 80.0
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.6e-74 283.1 312 72.8
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 3.4e-74 282.7 314 81.2
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 5.8e-74 282.0 291 82.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 7.6e-74 281.6 300 75.3
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 9.9e-74 281.2 294 73.5
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 9.9e-74 281.2 313 81.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.3e-73 280.8 300 75.3
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-73 279.6 291 82.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.8e-73 279.3 298 73.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 6.4e-73 278.5 299 80.6
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.1e-72 277.7 291 70.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.4e-72 277.3 291 75.6
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-72 276.6 291 81.8
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.4e-72 276.6 291 81.8
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 2.4e-72 276.6 313 74.8
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.4e-72 276.6 317 69.1
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-72 276.2 291 75.6
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 3.2e-72 276.2 291 74.9
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.2e-72 275.8 315 75.6
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.2e-72 275.8 291 81.1
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.4e-72 275.4 315 73.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.4e-72 275.4 304 73.0
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 5.4e-72 275.4 296 75.3
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 5.4e-72 275.4 300 80.7
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 9.3e-72 274.6 314 71.7
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.2e-71 274.2 291 71.8
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.6e-71 273.9 306 70.3
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.1e-71 273.5 299 79.9
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.7e-71 273.1 295 72.2
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-71 273.1 291 73.9
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.6e-71 272.3 300 74.3
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 6.0e-71 271.9 308 77.9
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 6.0e-71 271.9 291 81.1
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-70 271.2 291 75.3
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.3e-70 270.8 291 72.9
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.3e-70 270.0 311 68.2
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-70 269.2 291 74.6
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-70 269.2 291 74.6
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.9e-70 269.2 306 73.2
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.9e-70 269.2 299 71.9
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 5.1e-70 268.9 294 71.4
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 8.7e-70 268.1 300 73.3
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.1e-69 267.7 299 71.9
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.5e-69 267.3 293 65.2
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.5e-69 267.3 311 75.9
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.5e-69 266.5 315 77.1
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 4.3e-69 265.8 315 76.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 4.3e-69 265.8 294 75.9
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 5.6e-69 265.4 317 68.1
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 5.6e-69 265.4 317 68.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 7.3e-69 265.0 306 74.2
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 9.6e-69 264.6 305 78.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-68 263.8 294 71.4
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.6e-68 263.8 312 69.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.1e-68 263.5 315 72.1
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.8e-68 263.1 307 61.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 3.6e-68 262.7 312 65.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 4.8e-68 262.3 333 58.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.1e-67 261.2 311 75.6
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.1e-67 261.2 308 75.3
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.8e-67 260.4 258 70.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.8e-67 260.4 318 74.8
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 2.4e-67 260.0 310 74.2
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.0e-67 259.2 278 75.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 4.0e-67 259.2 319 74.9
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.0e-66 256.9 289 72.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.6e-66 256.5 295 75.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 3.4e-66 256.1 293 79.2
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 4.5e-66 255.8 234 73.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.3e-65 254.2 306 74.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.7e-65 253.8 303 76.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.9e-65 253.1 303 72.3
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.1e-64 251.1 315 69.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.4e-64 250.8 294 63.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.4e-64 250.0 302 68.5
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 3.2e-64 249.6 304 64.1
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 3.2e-64 249.6 301 68.8
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.1e-63 246.9 292 70.2
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.7e-63 246.5 313 72.8
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.5e-63 246.1 312 63.5
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 4.6e-63 245.7 285 77.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 7.9e-63 245.0 291 68.4
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.0e-62 244.6 291 69.8
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.9e-62 242.7 291 63.6
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.9e-62 242.7 291 63.6
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.1e-61 241.1 293 77.1
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 7.4e-61 238.4 175 77.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.4e-58 229.6 308 72.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.9e-58 228.0 231 67.5
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 9.9e-58 228.0 315 59.0
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-56 224.2 217 64.5
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-56 222.6 233 75.1
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 4.6e-55 219.2 320 56.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-52 210.3 189 72.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-52 209.5 191 70.7
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.7e-52 209.5 322 52.2
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.1e-51 206.5 287 65.2
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-51 205.3 189 61.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-50 204.1 189 60.8
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-50 203.4 188 67.6
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-45 187.2 186 79.6
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-45 187.2 153 68.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.2e-44 183.7 292 56.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.1e-43 181.4 311 59.8
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-42 177.9 180 68.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 7.6e-42 175.3 285 67.0
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 5.0e-41 172.6 296 59.1
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 8.5e-41 171.8 208 85.1
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.4e-40 171.0 320 50.3
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-40 169.5 217 54.4
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 9.4e-40 168.3 163 60.7
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-39 167.9 185 62.2
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 5.1e-38 162.5 154 61.7
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 6.7e-38 162.2 153 66.0
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 8.8e-38 161.8 148 62.2
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.3e-37 159.8 152 67.1
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.3e-37 159.5 147 65.3
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.7e-37 159.1 221 73.3
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 7.4e-37 158.7 272 58.5
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 9.7e-37 158.3 296 55.7
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.7e-36 157.5 173 59.5
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.1e-35 154.8 185 53.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.4e-35 154.5 158 57.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-35 152.1 154 68.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 6.9e-35 152.1 130 64.6
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 4.7e-31 139.4 152 68.4
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.5e-29 134.4 291 56.0
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.6e-29 133.7 86 80.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 7.4e-29 132.1 285 46.7
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-28 131.3 86 79.1
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-28 131.0 86 79.1
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-28 131.0 86 79.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-24 117.9 92 71.7
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.5e-24 117.1 285 43.5
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 4.8e-20 102.8 145 44.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.8e-20 102.8 87 67.8
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.1e-19 101.7 65 83.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.0e-17 95.1 155 76.8
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 2.5e-16 90.5 76 65.8
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.7e-13 79.3 60 71.7
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.5e-13 79.0 167 58.1
FvH4_6g53790 Fragaria vesca HOM05D000047 ORTHO05D006740 6.5e-09 65.9 87 50.6
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.5e-08 64.7 47 70.2
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 2.7e-07 60.5 75 46.7
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.7e-07 59.7 71 47.9


User provided reference genes

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