Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 6.6e-160 567.8 395 100.0
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.3e-91 340.9 312 84.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.2e-87 327.8 327 74.3
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-87 327.0 322 76.7
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.9e-83 313.2 321 75.1
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 6.1e-81 305.4 322 74.8
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.0e-81 305.1 322 75.5
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-80 304.3 322 74.2
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-79 301.2 322 74.2
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-79 301.2 322 74.2
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.6e-79 300.1 313 64.2
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.9e-77 293.9 301 73.8
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.9e-77 293.9 327 68.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.7e-76 290.0 325 74.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 4.6e-76 289.3 310 72.9
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 7.8e-76 288.5 310 72.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 3.3e-74 283.1 324 71.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 5.6e-74 282.3 301 72.1
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-73 281.2 301 72.1
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.2e-73 281.2 301 71.4
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.2e-73 281.2 310 72.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.7e-73 279.3 301 70.8
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.7e-73 279.3 311 68.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 4.7e-73 279.3 316 69.0
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.1e-72 278.1 306 69.3
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.1e-72 278.1 322 69.9
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.8e-72 277.3 310 71.0
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-72 277.3 301 71.8
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.1e-72 276.6 318 60.7
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 6.8e-72 275.4 300 67.0
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 8.9e-72 275.0 305 68.5
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-71 274.2 301 71.1
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-71 274.2 301 71.1
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.5e-71 274.2 325 72.3
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.0e-71 273.9 325 71.7
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.6e-71 273.5 322 64.0
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.8e-71 272.3 313 68.7
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.5e-71 271.9 325 72.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 9.8e-71 271.6 320 72.2
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.3e-70 271.2 313 67.1
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.2e-70 270.4 303 62.0
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.9e-70 270.0 325 71.4
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 6.4e-70 268.9 325 71.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 2.4e-69 266.9 315 70.5
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 2.4e-69 266.9 301 72.1
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 7.8e-68 261.9 290 70.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.3e-67 261.2 322 62.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.7e-67 260.8 309 71.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.3e-67 260.4 302 72.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.9e-67 259.6 304 62.8
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.9e-67 259.6 325 66.8
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 5.1e-67 259.2 311 72.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 5.1e-67 259.2 288 71.5
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.1e-67 259.2 325 64.9
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.6e-67 258.8 297 77.4
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 8.6e-67 258.5 309 70.9
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.1e-66 258.1 310 71.6
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.5e-66 257.7 289 70.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.5e-66 257.7 313 72.8
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 3.3e-66 256.5 234 70.9
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 3.3e-66 256.5 324 62.3
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 9.5e-66 255.0 322 59.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.6e-65 254.2 304 62.8
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.6e-65 254.2 339 69.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 4.7e-65 252.7 301 69.1
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 4.7e-65 252.7 309 62.8
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 6.2e-65 252.3 343 52.2
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.1e-64 251.5 301 61.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.1e-64 251.5 301 61.8
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.1e-64 251.5 317 64.0
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 1.4e-64 251.1 325 63.7
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.3e-64 250.4 301 69.1
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.3e-64 250.4 317 59.3
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 3.1e-64 250.0 315 69.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.1e-64 250.0 306 64.7
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.1e-64 250.0 309 62.8
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.2e-64 249.2 313 71.9
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 5.2e-64 249.2 326 67.8
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 8.9e-64 248.4 314 65.6
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.2e-63 248.1 306 68.6
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.5e-63 247.7 312 62.5
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.0e-63 247.3 312 63.8
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-63 247.3 301 68.4
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.0e-63 247.3 301 68.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.6e-63 246.9 300 59.7
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 3.4e-63 246.5 320 62.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 4.4e-63 246.1 317 67.2
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 4.4e-63 246.1 304 57.9
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 5.8e-63 245.7 322 67.4
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 1.3e-62 244.6 300 68.7
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.3e-62 244.6 322 59.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.7e-62 244.2 329 66.3
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.9e-62 243.4 317 67.2
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.4e-61 240.4 304 69.7
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 5.4e-61 239.2 301 69.4
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 9.2e-61 238.4 325 57.5
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 9.2e-61 238.4 325 57.5
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.5e-60 236.5 325 64.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 4.6e-60 236.1 314 67.2
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 7.8e-60 235.3 313 66.5
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.0e-59 235.0 325 60.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.5e-58 230.3 313 67.7
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 2.5e-58 230.3 295 67.8
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 4.3e-58 229.6 312 58.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.6e-58 229.2 311 65.0
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.2e-57 228.0 323 64.4
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-57 227.3 217 62.2
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.1e-57 227.3 258 59.3
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 2.1e-57 227.3 305 72.5
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.2e-57 225.7 311 72.7
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.8e-56 224.2 301 60.8
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 5.2e-56 222.6 309 64.4
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 8.9e-56 221.9 303 67.3
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.2e-54 217.2 332 50.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.4e-53 214.5 317 64.0
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.9e-53 214.2 314 54.8
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.2e-53 213.4 282 72.3
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-52 210.7 189 59.3
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-51 208.4 189 58.7
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.5e-50 203.8 160 72.5
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-49 200.7 233 65.2
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.4e-48 198.0 231 53.7
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.8e-48 197.6 307 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.1e-44 184.1 295 60.7
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 4.6e-44 183.0 189 56.6
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 5.1e-43 179.5 191 53.9
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.3e-42 175.6 147 68.0
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.1e-41 174.1 185 58.9
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-41 173.3 189 52.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 8.1e-41 172.2 294 63.6
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-40 171.8 185 60.0
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.1e-40 171.8 130 70.0
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-40 171.0 185 64.3
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.3e-40 169.5 122 72.1
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.3e-40 169.5 295 56.9
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-39 166.8 148 60.1
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 5.8e-39 166.0 168 56.0
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 7.6e-39 165.6 218 51.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 8.4e-38 162.2 126 67.5
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-36 156.8 186 62.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-33 148.3 95 81.1
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-33 147.9 95 81.1
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.6e-33 147.9 95 81.1
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.8e-33 147.1 152 61.2
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 1.7e-30 137.9 212 72.6
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-30 137.1 88 80.7
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 5.5e-29 132.9 302 50.0
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.9e-27 126.7 157 48.4
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-25 121.7 94 72.3
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 2.4e-24 117.5 129 55.8
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-23 114.0 207 62.8
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 6.5e-22 109.4 163 49.7
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.2e-21 106.7 89 68.5
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 9.3e-21 105.5 67 83.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-20 104.0 158 43.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 8.7e-19 99.0 152 48.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 2.2e-17 94.4 123 46.3
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.8e-16 91.3 61 77.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.4e-13 81.6 47 83.0
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-13 81.6 62 71.0
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.3e-10 70.5 125 72.8
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.7e-09 68.2 81 46.9
FvH4_6g53790 Fragaria vesca HOM05D000047 ORTHO05D006740 6.3e-09 66.2 87 50.6
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 2.4e-08 64.3 82 46.3
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 5.3e-08 63.2 31 90.3
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-07 60.1 31 80.6
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 4.5e-07 60.1 81 42.0


User provided reference genes

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