Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 6.4e-64 247.3 128 100.0
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 4.2e-55 218.0 134 86.6
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 5.5e-55 217.6 134 85.8
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.6e-54 216.1 134 85.1
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.7e-54 215.3 134 85.1
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.7e-54 215.3 134 85.8
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 3.5e-54 214.9 138 83.3
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 1.9e-52 209.1 137 81.0
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 1.9e-52 209.1 134 82.1
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 1.0e-48 196.8 135 74.8
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 8.4e-48 193.7 128 75.0
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 3.2e-47 191.8 127 75.6
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 9.3e-47 190.3 128 76.6
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 9.3e-47 190.3 128 76.6
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 2.1e-46 189.1 122 76.2
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 6.1e-46 187.6 134 72.4
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.3e-45 186.4 132 73.5
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.8e-45 186.0 132 73.5
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 2.3e-45 185.7 136 69.1
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 3.0e-45 185.3 132 72.0
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 3.9e-45 184.9 143 68.5
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 5.1e-45 184.5 136 68.4
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 6.7e-45 184.1 132 70.5
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 6.7e-45 184.1 132 70.5
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 8.7e-45 183.7 126 75.4
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 1.1e-44 183.3 132 71.2
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 1.1e-44 183.3 131 71.8
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 1.9e-44 182.6 122 78.7
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 4.3e-44 181.4 136 68.4
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 5.7e-44 181.0 132 70.5
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 3.7e-43 178.3 135 70.4
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 6.3e-43 177.6 130 74.6
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 8.2e-43 177.2 133 72.9
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 1.4e-42 176.4 136 71.3
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 2.4e-42 175.6 136 68.4
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 3.1e-42 175.3 133 69.2
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 5.3e-42 174.5 129 72.1
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 6.9e-42 174.1 132 72.0
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 1.2e-41 173.3 135 67.4
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.5e-41 172.9 122 72.1
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 2.0e-41 172.6 129 69.0
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 4.5e-41 171.4 123 72.4
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 4.5e-41 171.4 134 69.4
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 5.9e-41 171.0 136 69.1
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 1.0e-40 170.2 135 64.4
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 2.2e-40 169.1 136 64.0
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 2.9e-40 168.7 137 66.4
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 3.8e-40 168.3 110 76.4
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 5.0e-40 167.9 135 63.7
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 5.0e-40 167.9 135 63.7
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 8.5e-40 167.2 120 73.3
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 1.1e-39 166.8 136 66.2
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 1.9e-39 166.0 132 65.2
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 2.5e-39 165.6 132 65.9
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 3.2e-39 165.2 137 62.8
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 4.2e-39 164.9 125 68.0
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 4.2e-39 164.9 137 60.6
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 7.2e-39 164.1 134 62.7
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 1.2e-38 163.3 140 62.1
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 1.2e-38 163.3 136 60.3
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 1.2e-38 163.3 136 60.3
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 2.1e-38 162.5 135 63.7
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 2.7e-38 162.2 126 67.5
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 4.6e-38 161.4 134 62.7
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 6.1e-38 161.0 141 59.6
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 6.1e-38 161.0 124 66.9
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 1.4e-37 159.8 142 59.9
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 1.4e-37 159.8 132 68.9
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 3.0e-37 158.7 114 71.9
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 3.0e-37 158.7 121 70.2
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 6.7e-37 157.5 123 67.5
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 6.7e-37 157.5 123 69.1
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 6.7e-37 157.5 132 59.8
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 1.1e-36 156.8 137 59.1
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 1.5e-36 156.4 128 65.6
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 4.3e-36 154.8 123 67.5
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 2.8e-35 152.1 131 58.8
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 6.3e-35 151.0 121 64.5
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 1.4e-34 149.8 95 76.8
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 1.5e-33 146.4 114 66.7
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 1.5e-33 146.4 121 64.5
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 1.5e-33 146.4 130 60.8
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 3.4e-33 145.2 130 57.7
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 7.7e-33 144.1 133 56.4
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 1.0e-32 143.7 122 59.8
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 6.5e-32 141.0 128 57.8
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 6.5e-32 141.0 120 63.3
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.4e-31 139.8 119 63.9
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 2.5e-31 139.0 124 58.1
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 3.2e-31 138.7 126 61.9
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 8.8e-29 130.6 112 62.5
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 7.4e-28 127.5 108 63.9
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 3.7e-27 125.2 125 60.8
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 6.3e-27 124.4 135 51.1
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 2.4e-26 122.5 92 71.7
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.1e-23 113.6 108 58.3
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 8.0e-22 107.5 131 47.3
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 1.4e-21 106.7 124 49.2
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 2.2e-19 99.4 131 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 3.2e-15 85.5 124 41.9
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.0e-08 63.9 52 63.5


User provided reference genes

Program Settings