Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 3.8e-97 358.2 186 100.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.5e-72 275.8 167 90.4
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.2e-72 275.4 167 90.4
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.2e-72 275.0 167 88.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.5e-71 271.9 178 84.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.1e-70 268.1 168 86.9
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.8e-68 262.3 178 82.6
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 5.7e-37 158.3 168 59.5
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 6.3e-36 154.8 175 61.7
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 8.3e-36 154.5 165 60.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 8.3e-36 154.5 163 61.3
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 3.1e-35 152.5 173 60.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 3.1e-35 152.5 181 59.7
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.1e-35 152.1 175 58.9
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.7e-34 149.4 179 61.5
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 4.5e-34 148.7 168 55.4
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.8e-33 145.6 164 54.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.8e-33 145.6 164 56.1
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 5.0e-33 145.2 160 56.9
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 9.4e-32 141.0 168 60.1
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.6e-31 140.2 168 56.5
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.7e-31 139.4 168 56.0
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.0e-30 137.5 166 54.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-30 136.7 162 57.4
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.8e-30 136.7 162 57.4
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-30 136.3 162 57.4
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 6.8e-30 134.8 207 49.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 6.8e-30 134.8 165 53.9
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.8e-30 134.4 150 58.0
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.6e-29 132.9 164 53.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 9.8e-29 131.0 161 55.9
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.7e-28 130.2 177 61.6
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 3.7e-28 129.0 167 50.9
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.8e-28 128.6 174 52.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.8e-28 128.6 174 52.9
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.4e-27 125.2 172 50.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.0e-27 124.8 154 56.5
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-26 123.6 175 56.0
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-26 122.9 167 53.9
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.7e-26 122.9 167 53.9
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.7e-26 122.9 166 50.6
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 7.7e-26 121.3 166 50.6
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.3e-25 120.6 168 49.4
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.3e-25 120.6 172 48.8
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.0e-25 118.6 161 51.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.0e-25 118.6 174 51.7
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.1e-24 117.5 161 48.4
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.3e-24 115.9 176 51.7
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.2e-24 115.5 167 52.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.2e-24 115.5 179 47.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 5.5e-24 115.2 150 57.3
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 7.2e-24 114.8 163 51.5
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 9.5e-24 114.4 170 48.8
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-23 114.0 130 55.4
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-23 114.0 173 52.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 3.6e-23 112.5 164 50.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 3.6e-23 112.5 162 48.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-23 112.1 167 52.7
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 6.1e-23 111.7 163 48.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 8.0e-23 111.3 172 50.6
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.0e-22 110.9 172 50.6
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.3e-22 109.8 165 50.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.3e-22 109.8 164 52.4
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 3.0e-22 109.4 170 47.1
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 3.0e-22 109.4 167 50.3
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 6.8e-22 108.2 165 44.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 8.9e-22 107.8 174 51.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.2e-21 107.5 175 45.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.2e-21 107.5 161 50.3
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.5e-21 107.1 166 48.2
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.5e-21 107.1 169 47.9
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.5e-21 107.1 174 45.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.5e-21 107.1 164 50.0
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.6e-21 106.3 162 47.5
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.4e-21 105.9 156 55.1
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.4e-21 105.9 163 53.4
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.4e-21 105.5 151 55.0
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.7e-21 105.1 170 50.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 5.7e-21 105.1 174 46.6
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 9.8e-21 104.4 151 47.7
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.2e-20 103.2 157 50.3
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.8e-20 102.8 166 45.2
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-20 102.1 163 43.6
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-20 102.1 163 43.6
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 4.9e-20 102.1 163 43.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 6.3e-20 101.7 168 45.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 6.3e-20 101.7 159 48.4
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 8.3e-20 101.3 140 52.1
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-19 100.9 163 42.9
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.4e-19 100.5 157 49.7
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.4e-19 99.8 163 49.7
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 5.4e-19 98.6 169 49.1
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.4e-19 98.6 165 49.7
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 7.0e-19 98.2 151 49.0
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 9.2e-19 97.8 168 46.4
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.2e-19 97.8 169 46.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.2e-18 97.4 169 48.5
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.6e-18 97.1 194 42.8
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.0e-18 96.7 164 45.1
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-18 96.7 164 45.1
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-18 96.3 164 44.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.7e-18 96.3 124 53.2
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.9e-18 95.1 169 45.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 7.8e-18 94.7 164 44.5
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.0e-17 94.4 168 42.3
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.9e-17 92.8 168 44.0
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.9e-17 92.8 159 44.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 3.9e-17 92.4 171 44.4
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.9e-17 92.4 172 42.4
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 5.0e-17 92.0 169 39.6
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 5.0e-17 92.0 179 48.0
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 6.6e-17 91.7 181 47.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.6e-17 91.3 148 49.3
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-16 90.5 169 42.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 7.3e-16 88.2 165 38.2
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.5e-16 87.8 141 45.4
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 9.5e-16 87.8 165 38.2
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.2e-15 87.4 165 38.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.2e-15 87.4 165 38.2
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.2e-15 87.4 163 44.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-15 87.0 166 39.2
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-15 86.7 168 41.7
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.6e-15 85.9 149 49.0
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.6e-15 85.9 153 41.2
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.1e-15 85.1 165 37.6
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.1e-15 85.1 165 37.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.1e-15 85.1 165 42.4
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.0e-14 84.3 154 38.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-14 83.6 139 44.6
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.8e-14 83.6 180 36.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.3e-14 83.2 148 46.6
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 3.1e-14 82.8 150 49.3
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 3.1e-14 82.8 160 48.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-14 82.4 171 38.6
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 8.9e-14 81.3 160 48.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.2e-13 80.9 158 45.6
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-13 80.5 172 40.1
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-13 80.5 172 40.1
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.5e-13 80.5 170 37.6
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.0e-13 80.1 164 43.3
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 2.9e-12 76.3 120 45.8
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 6.4e-12 75.1 169 41.4
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 8.3e-12 74.7 174 43.7
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.4e-11 73.2 127 44.1
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-10 70.9 131 48.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-10 70.5 112 45.5
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.6e-10 70.5 120 43.3
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-10 70.1 112 47.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 4.6e-10 68.9 171 36.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 6.0e-10 68.6 171 37.4
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 6.0e-10 68.6 129 43.4
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 7.8e-10 68.2 178 38.2
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.8e-10 68.2 62 64.5
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.3e-09 67.4 165 35.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.3e-09 67.4 160 38.8
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-09 66.6 111 45.0
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.0e-09 65.5 83 59.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.0e-09 65.5 143 37.1
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 6.6e-09 65.1 102 49.0
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 8.6e-09 64.7 102 42.2
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.9e-08 63.5 125 42.4
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.5e-08 63.2 165 35.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 3.6e-07 59.3 168 36.3
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 4.7e-07 58.9 89 46.1
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.4e-06 57.4 124 37.9
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-06 56.2 31 80.6
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 3.1e-06 56.2 136 36.8


User provided reference genes

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