Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 3.5e-28 127.5 61 100.0
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 1.8e-24 115.2 61 90.2
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 5.1e-19 97.1 60 78.3
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 9.7e-18 92.8 61 72.1
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 2.0e-15 85.1 61 72.1
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 3.4e-15 84.3 61 65.6
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 1.0e-14 82.8 48 75.0
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 2.2e-14 81.6 61 65.6
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 2.5e-13 78.2 63 65.1
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 3.2e-13 77.8 58 63.8
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 4.2e-13 77.4 59 64.4
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 7.2e-13 76.6 51 70.6
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 1.2e-12 75.9 59 64.4
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 3.6e-12 74.3 49 69.4
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 3.6e-12 74.3 49 69.4
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 4.6e-12 73.9 61 59.0
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 4.6e-12 73.9 61 59.0
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 6.1e-12 73.6 58 62.1
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 7.9e-12 73.2 61 63.9
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 7.9e-12 73.2 60 55.0
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 1.0e-11 72.8 50 68.0
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 1.0e-11 72.8 50 68.0
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 1.4e-11 72.4 60 55.0
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 1.8e-11 72.0 41 73.2
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.8e-11 72.0 43 72.1
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 2.3e-11 71.6 50 66.0
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 3.0e-11 71.2 61 50.8
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 3.9e-11 70.9 51 68.6
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 5.1e-11 70.5 51 68.6
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 8.8e-11 69.7 50 62.0
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 5.7e-10 67.0 56 55.4
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 1.7e-09 65.5 48 64.6
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 1.5e-07 58.9 38 63.2
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.0e-07 58.5 44 56.8
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.0e-07 58.5 44 56.8
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 2.6e-07 58.2 61 49.2
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.5e-07 57.4 41 51.2
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 4.5e-07 57.4 41 51.2
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.5e-07 57.4 41 51.2
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 5.9e-07 57.0 65 43.1
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 5.9e-07 57.0 45 48.9
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 7.7e-07 56.6 52 42.3
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 1.0e-06 56.2 61 42.6
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 1.0e-06 56.2 59 45.8
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 1.0e-06 56.2 41 58.5
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 54.5
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 54.5
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 54.5
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 54.5
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 1.3e-06 55.8 44 54.5
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 1.3e-06 55.8 45 46.7
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 1.3e-06 55.8 40 50.0
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-06 55.5 44 47.7
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.7e-06 55.5 50 52.0
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.7e-06 55.5 50 52.0
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 1.7e-06 55.5 50 52.0
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 2.2e-06 55.1 44 47.7
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 2.2e-06 55.1 44 47.7
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 2.2e-06 55.1 34 67.6
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 2.9e-06 54.7 43 55.8
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 3.8e-06 54.3 57 43.9
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 5.0e-06 53.9 46 47.8
Os01g0178850 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 5.0e-06 53.9 34 64.7
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 5.0e-06 53.9 39 51.3
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 5.0e-06 53.9 44 47.7
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 6.5e-06 53.5 55 49.1
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.5e-06 53.1 44 45.5
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 8.5e-06 53.1 58 39.7
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 8.5e-06 53.1 41 48.8
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 8.5e-06 53.1 39 48.7
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 8.5e-06 53.1 46 45.7


User provided reference genes

Program Settings