Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090851 Rosa chinensis HOM05D003545 ORTHO05D011382 1.0e-66 256.5 125 100.0
RcHm_v2.0_Chr1g0328121 Rosa chinensis HOM05D003545 ORTHO05D004720 3.1e-39 165.2 82 97.6
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 7.0e-39 164.1 82 96.3
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 7.0e-39 164.1 82 95.1
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 9.1e-39 163.7 82 95.1
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 1.2e-38 163.3 82 95.1
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 1.2e-38 163.3 82 97.6
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 1.6e-38 162.9 82 96.3
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.6e-38 162.9 82 96.3
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.6e-38 162.9 82 96.3
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 2.7e-38 162.2 82 93.9
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 3.5e-38 161.8 82 93.9
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 3.5e-38 161.8 107 78.5
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 4.5e-38 161.4 82 95.1
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 93.9
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 93.9
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 93.9
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 93.9
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 91.5
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 5.9e-38 161.0 82 93.9
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 7.7e-38 160.6 82 92.7
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 7.7e-38 160.6 82 92.7
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 1.0e-37 160.2 82 93.9
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 1.0e-37 160.2 82 95.1
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 1.0e-37 160.2 82 92.7
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 1.0e-37 160.2 82 92.7
RcHm_v2.0_Chr1g0332011 Rosa chinensis HOM05D003545 ORTHO05D004720 1.3e-37 159.8 82 95.1
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 1.7e-37 159.5 82 92.7
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 2.3e-37 159.1 82 92.7
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 2.3e-37 159.1 82 92.7
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 2.9e-37 158.7 82 90.2
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 2.9e-37 158.7 82 92.7
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 2.9e-37 158.7 82 92.7
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 90.2
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 90.2
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 91.5
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 91.5
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 92.7
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 90.2
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 90.2
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 3.8e-37 158.3 82 90.2
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 5.0e-37 157.9 82 92.7
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 5.0e-37 157.9 82 92.7
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 5.0e-37 157.9 82 90.2
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 5.0e-37 157.9 82 92.7
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 5.0e-37 157.9 82 91.5
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 6.5e-37 157.5 82 90.2
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 6.5e-37 157.5 82 90.2
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 6.5e-37 157.5 82 91.5
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 6.5e-37 157.5 82 90.2
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 8.6e-37 157.1 82 91.5
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 8.6e-37 157.1 82 91.5
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 1.1e-36 156.8 82 89.0
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 1.1e-36 156.8 82 91.5
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 1.1e-36 156.8 82 91.5
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 1.1e-36 156.8 82 87.8
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 1.5e-36 156.4 82 91.5
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 1.5e-36 156.4 82 91.5
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 1.5e-36 156.4 82 90.2
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 1.9e-36 156.0 82 89.0
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.9e-36 156.0 82 91.5
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 1.9e-36 156.0 82 90.2
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 1.9e-36 156.0 82 90.2
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 2.5e-36 155.6 82 90.2
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 2.5e-36 155.6 82 90.2
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 3.3e-36 155.2 82 89.0
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 3.3e-36 155.2 82 90.2
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 3.3e-36 155.2 82 90.2
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 3.3e-36 155.2 82 89.0
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 4.2e-36 154.8 82 90.2
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 4.2e-36 154.8 82 89.0
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 5.5e-36 154.5 82 89.0
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 90.2
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 87.8
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 7.2e-36 154.1 81 91.4
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 7.2e-36 154.1 81 91.4
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 7.2e-36 154.1 82 89.0
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 86.6
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 86.6
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 86.6
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 86.6
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 86.6
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 89.0
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 9.5e-36 153.7 82 87.8
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 1.2e-35 153.3 82 90.2
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 1.2e-35 153.3 82 89.0
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.6e-35 152.9 82 86.6
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 1.6e-35 152.9 82 89.0
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 2.1e-35 152.5 82 89.0
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 2.1e-35 152.5 82 85.4
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 2.1e-35 152.5 82 86.6
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 2.1e-35 152.5 82 85.4
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 2.1e-35 152.5 82 86.6
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 2.8e-35 152.1 82 86.6
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 2.8e-35 152.1 82 86.6
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 2.8e-35 152.1 82 90.2
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 2.8e-35 152.1 82 90.2
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 2.8e-35 152.1 82 90.2
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 3.6e-35 151.8 82 85.4
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.6e-35 151.8 82 86.6
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.6e-35 151.8 82 86.6
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 3.6e-35 151.8 90 84.4
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 4.7e-35 151.4 82 87.8
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 4.7e-35 151.4 82 85.4
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 6.1e-35 151.0 82 84.1
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 6.1e-35 151.0 82 85.4
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 6.1e-35 151.0 82 85.4
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 6.1e-35 151.0 82 89.0
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 8.0e-35 150.6 82 86.6
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 8.0e-35 150.6 82 85.4
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 1.0e-34 150.2 82 89.0
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 1.4e-34 149.8 81 87.7
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 1.4e-34 149.8 81 87.7
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.8e-34 149.4 81 88.9
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 1.8e-34 149.4 81 88.9
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 4.0e-34 148.3 81 85.2
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 4.0e-34 148.3 81 85.2
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 4.0e-34 148.3 81 85.2
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 4.0e-34 148.3 81 85.2
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 4.0e-34 148.3 81 85.2
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 4.0e-34 148.3 82 84.1
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 5.2e-34 147.9 82 85.4
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 8.9e-34 147.1 82 85.4
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 2.0e-33 146.0 81 84.0
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 2.0e-33 146.0 82 84.1
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 3.4e-33 145.2 81 84.0
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 9.8e-33 143.7 82 82.9
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 6.3e-32 141.0 81 82.7
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 6.3e-32 141.0 82 81.7
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 6.3e-32 141.0 82 81.7
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 6.3e-32 141.0 82 81.7
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 8.3e-32 140.6 81 81.5
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 1.8e-31 139.4 81 81.5
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 1.8e-31 139.4 81 81.5
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 1.8e-31 139.4 81 81.5
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 2.4e-31 139.0 82 79.3
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.2e-30 136.7 82 79.3
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 1.2e-30 136.7 82 78.0
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 4.5e-30 134.8 82 76.8
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 1.3e-29 133.3 70 88.6
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 1.7e-29 132.9 74 82.4
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 1.5e-28 129.8 82 79.3
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 1.9e-28 129.4 81 75.3
C02p40050 Brassica napus HOM05D003545 ORTHO05D011382 9.5e-28 127.1 74 79.7
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 2.1e-27 125.9 81 72.8
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 8.0e-27 124.0 69 82.6
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 3.0e-26 122.1 82 75.6
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 1.5e-25 119.8 82 74.4
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 1.5e-25 119.8 82 74.4
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 3.4e-25 118.6 66 84.8
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 3.4e-25 118.6 63 85.7
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 5.8e-25 117.9 82 68.3
BcaC05g29263 Brassica carinata HOM05D003545 ORTHO05D024095 1.3e-24 116.7 86 64.0
BolC5t31394H Brassica oleracea HOM05D003545 ORTHO05D024095 1.9e-23 112.8 86 62.8
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 5.6e-20 101.3 78 60.3
C01p23170 Brassica napus HOM05D001404 ORTHO05D004720 2.8e-19 99.0 52 82.7
BcaC04g21066 Brassica carinata HOM05D000458 ORTHO05D000951 5.2e-18 94.7 53 77.4
C01p52430 Brassica napus HOM05D003545 ORTHO05D024095 5.2e-18 94.7 53 77.4
C09p36080 Brassica napus HOM05D003545 ORTHO05D024095 5.2e-18 94.7 53 77.4
BolC9t56447H Brassica oleracea HOM05D003545 ORTHO05D024095 9.8e-17 90.5 52 76.9
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 1.1e-12 77.0 37 91.9
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 1.3e-08 63.5 36 86.1
C03p30540 Brassica napus HOM05D003545 ORTHO05D031779 1.7e-08 63.2 74 47.3
AL1G53080 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.7e-06 55.8 34 73.5


User provided reference genes

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