Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090681 Rosa chinensis HOM05D006732 ORTHO05D005682 2.6e-247 858.2 420 100.0
FvH4_1g07310 Fragaria vesca HOM05D006732 ORTHO05D005682 4.7e-180 634.8 417 78.2
FvH4_1g07350 Fragaria vesca HOM05D006732 ORTHO05D005682 7.0e-176 620.9 411 77.9
FvH4_5g09240 Fragaria vesca HOM05D006732 ORTHO05D005682 2.6e-138 496.1 378 63.8
FAN08G0591 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.5e-135 485.7 378 62.7
FAN18G2797 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.9e-135 484.6 380 62.1
RcHm_v2.0_Chr2g0090631 Rosa chinensis HOM05D006732 ORTHO05D005682 9.9e-130 467.6 383 61.6
RcHm_v2.0_Chr2g0088891 Rosa chinensis HOM05D006732 ORTHO05D005682 6.4e-129 464.9 380 61.6
RcHm_v2.0_Chr7g0225411 Rosa chinensis HOM05D006732 ORTHO05D005682 1.2e-127 460.7 418 56.9
FAN23G0913 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-122 443.7 312 68.9
FAN23G1322 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.1e-118 428.7 385 56.4
FvH4_1g04981 Fragaria vesca HOM05D006732 ORTHO05D005682 1.9e-117 426.8 385 56.4
FAN19G0447 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-117 426.4 385 56.1
FAN19G2793 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-116 424.1 384 56.2
FvH4_1g04870 Fragaria vesca HOM05D006732 ORTHO05D005682 3.7e-116 422.5 385 55.8
FAN26G1852 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.8e-116 422.2 420 56.7
FAN13G2469 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-115 420.2 358 59.2
FvH4_1g04892 Fragaria vesca HOM05D006732 ORTHO05D005682 6.9e-115 418.3 385 55.8
FAN19G1623 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-114 417.2 380 56.6
FvH4_1g04982 Fragaria vesca HOM05D006732 ORTHO05D005682 1.9e-112 410.2 386 54.4
FAN26G0144 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.2e-112 408.3 380 55.8
FAN26G0599 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-111 407.1 378 55.8
FAN26G0545 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.9e-111 404.8 375 55.7
FAN03G1911 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.8e-108 395.6 424 50.0
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.3e-108 395.2 361 55.4
FAN23G2814 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.3e-108 395.2 361 55.4
FAN19G1442 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.7e-103 379.0 374 52.7
FvH4_1g04650 Fragaria vesca HOM05D006732 ORTHO05D005682 2.3e-102 376.7 377 53.1
FAN23G0775 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.8e-102 374.8 354 53.4
FAN19G0608 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.4e-101 371.7 333 55.6
FAN19G1839 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.7e-97 360.5 369 51.8
FAN23G1448 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.2e-96 355.1 374 51.9
FAN19G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-93 346.7 336 54.2
FvH4_1g04980 Fragaria vesca HOM05D006732 ORTHO05D005682 3.3e-93 346.3 336 53.9
FvH4_1g05020 Fragaria vesca HOM05D006732 ORTHO05D005682 2.4e-91 340.1 359 51.3
FAN23G0359 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.3e-91 339.0 336 52.7
FAN28G0011 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.5e-85 318.5 423 42.8
FAN26G1230 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.1e-83 313.2 383 45.2
FvH4_5g09163 Fragaria vesca HOM05D006732 ORTHO05D005682 1.1e-80 304.7 218 64.2
FAN26G2691 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.0e-78 296.2 170 81.2
FvH4_1g03870 Fragaria vesca HOM05D006732 ORTHO05D005682 1.8e-75 287.3 256 56.6
FvH4_1g04850 Fragaria vesca HOM05D006732 ORTHO05D005682 3.1e-75 286.6 170 77.1
RcHm_v2.0_Chr4g0406891 Rosa chinensis HOM05D006732 ORTHO05D005682 1.6e-74 284.3 433 42.5
FAN26G0550 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-72 276.9 162 79.6
FvH4_1g03120 Fragaria vesca HOM05D006732 ORTHO05D005682 1.8e-70 270.8 375 44.3
FAN19G1106 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.3e-70 270.4 411 41.6
FAN06G2841 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.8e-65 253.1 387 43.9
FAN06G4694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.8e-65 253.1 387 43.9
FAN26G2548 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-64 251.5 326 44.5
FvH4_1g03650 Fragaria vesca HOM05D006732 ORTHO05D005682 1.9e-64 250.8 410 39.3
FvH4_7g04610 Fragaria vesca HOM05D006732 ORTHO05D005682 1.6e-63 247.7 387 43.4
FAN03G3183 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.1e-63 245.7 375 43.7
FAN01G2330 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.4e-61 240.0 378 43.4
FvH4_1g03800 Fragaria vesca HOM05D006732 ORTHO05D005682 8.0e-55 218.8 413 38.3
FAN23G0993 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.1e-51 206.5 163 59.5
RcHm_v2.0_Chr2g0090141 Rosa chinensis HOM05D006732 ORTHO05D005682 1.7e-49 201.1 163 60.1
FAN14G2290 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.6e-47 193.4 341 39.3
FAN10G1871 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.2e-47 192.6 282 45.7
FAN26G1044 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-45 187.2 347 38.6
FAN28G2932 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.7e-44 183.3 204 53.4
FvH4_1g07301 Fragaria vesca HOM05D006732 ORTHO05D005682 3.5e-42 176.8 100 80.0
RcHm_v2.0_Chr2g0089871 Rosa chinensis HOM05D006732 ORTHO05D005682 1.0e-41 175.3 139 59.0
FAN19G1133 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.6e-41 172.2 395 33.4
FvH4_1g03730 Fragaria vesca HOM05D006732 ORTHO05D005682 1.5e-40 171.4 261 39.5
FvH4_6g38540 Fragaria vesca HOM05D006732 ORTHO05D005682 7.3e-40 169.1 393 34.4
FAN26G3406 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.3e-40 169.1 202 44.6
FAN19G1213 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.5e-40 168.7 330 34.8
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.6e-39 166.8 360 38.1
FAN19G2470 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-36 158.3 337 35.3
MD02G1004600 Malus domestica HOM05D006732 ORTHO05D005682 7.1e-35 152.5 355 34.6
FvH4_3g44180 Fragaria vesca HOM05D031336 ORTHO05D029596 3.0e-33 147.1 407 29.5
FAN11G3653 Fragaria x ananassa HOM05D031336 ORTHO05D029596 3.0e-33 147.1 407 29.5
FAN19G2055 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-32 145.2 77 88.3
FAN08G2174 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.0e-30 135.6 106 56.6
RcHm_v2.0_Chr1g0380941 Rosa chinensis HOM05D006732 ORTHO05D005682 1.3e-28 131.7 421 28.5
RcHm_v2.0_Chr1g0337091 Rosa chinensis HOM05D010677 ORTHO05D012678 3.8e-28 130.2 350 30.0
FAN28G1694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-28 129.0 171 44.4
FAN23G2570 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-26 125.2 67 83.6
FAN23G1506 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.7e-26 124.0 67 82.1
FAN19G3146 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.6e-26 123.2 189 39.2
RcHm_v2.0_Chr1g0379901 Rosa chinensis HOM05D008398 ORTHO05D005682 4.6e-26 123.2 411 29.2
FAN23G1684 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.3e-25 120.9 176 39.2
RcHm_v2.0_Chr1g0379941 Rosa chinensis HOM05D008398 ORTHO05D005682 5.1e-25 119.8 412 28.6
FAN19G1560 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-24 118.2 173 46.8
RcHm_v2.0_Chr1g0376501 Rosa chinensis HOM05D008398 ORTHO05D005682 1.5e-24 118.2 276 33.3
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.9e-24 117.9 420 27.6
RcHm_v2.0_Chr1g0329851 Rosa chinensis HOM05D006732 ORTHO05D005682 2.5e-24 117.5 193 42.0
FvH4_7g27001 Fragaria vesca HOM05D010677 ORTHO05D012678 5.6e-24 116.3 422 27.3
FvH4_5g34640 Fragaria vesca HOM05D008398 ORTHO05D005682 9.6e-24 115.5 317 33.8
FvH4_7g31320 Fragaria vesca HOM05D010677 ORTHO05D012678 2.8e-23 114.0 308 28.2
FAN18G3618 Fragaria x ananassa HOM05D008398 ORTHO05D005682 6.2e-23 112.8 316 32.9
FAN10G1111 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.8e-22 111.3 287 28.9
FAN15G3012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.8e-22 111.3 288 32.3
FvH4_6g52510 Fragaria vesca HOM05D013417 ORTHO05D022618 3.1e-22 110.5 314 30.3
FAN03G2148 Fragaria x ananassa HOM05D018501 ORTHO05D020617 3.1e-22 110.5 366 28.1
FvH4_7g31670 Fragaria vesca HOM05D010677 ORTHO05D012678 4.0e-22 110.2 280 32.5
FvH4_7g31260 Fragaria vesca HOM05D010677 ORTHO05D012678 6.9e-22 109.4 282 30.5
FAN19G1906 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.0e-22 109.0 148 43.9
FAN01G2543 Fragaria x ananassa HOM05D008398 ORTHO05D046348 1.5e-21 108.2 321 33.6
FAN04G2845 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.0e-21 107.8 417 25.9
RcHm_v2.0_Chr1g0337131 Rosa chinensis HOM05D006732 ORTHO05D012678 2.0e-21 107.8 197 35.5
FAN06G1115 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.4e-21 107.1 300 27.3
FAN06G1601 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.4e-21 107.1 300 27.3
Prupe.2G176100 Prunus persica HOM05D006732 ORTHO05D005682 4.5e-21 106.7 269 32.7
FAN10G0863 Fragaria x ananassa HOM05D008398 ORTHO05D005682 7.6e-21 105.9 293 33.1
FAN23G1145 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.6e-21 105.9 68 73.5
FvH4_7g31682 Fragaria vesca HOM05D010677 ORTHO05D012678 9.9e-21 105.5 280 30.7
FAN10G3231 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.2e-20 104.4 251 29.5
Prupe.6G029800 Prunus persica HOM05D006732 ORTHO05D005682 2.2e-20 104.4 202 34.2
FvH4_5g09162 Fragaria vesca HOM05D006732 ORTHO05D005682 4.9e-20 103.2 93 54.8
Prupe.7G110000 Prunus persica HOM05D006732 ORTHO05D005682 4.9e-20 103.2 234 35.5
RcHm_v2.0_Chr5g0043771 Rosa chinensis HOM05D018501 ORTHO05D020617 4.9e-20 103.2 333 28.2
FvH4_6g50450 Fragaria vesca HOM05D008398 ORTHO05D005682 1.4e-19 101.7 349 29.8
FAN05G0770 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.4e-19 100.9 352 28.7
FAN03G3389 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.2e-19 100.5 281 29.2
FAN23G1741 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.2e-19 100.1 159 38.4
FAN26G3385 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-18 98.2 141 41.8
RcHm_v2.0_Chr5g0043731 Rosa chinensis HOM05D018501 ORTHO05D020617 1.6e-18 98.2 373 26.8
FAN06G4869 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.1e-18 97.8 325 28.6
FvH4_7g30481 Fragaria vesca HOM05D008398 ORTHO05D029520 2.7e-18 97.4 288 28.5
FAN06G0523 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.7e-18 97.4 288 28.1
FAN28G1562 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.7e-18 97.4 78 55.1
FAN06G1563 Fragaria x ananassa HOM05D018501 ORTHO05D020617 3.5e-18 97.1 323 28.8
FvH4_2g38420 Fragaria vesca HOM05D013417 ORTHO05D022618 4.6e-18 96.7 317 30.0
FvH4_1g04520 Fragaria vesca HOM05D006732 ORTHO05D005682 1.0e-17 95.5 337 23.7
FvH4_7g04500 Fragaria vesca HOM05D018501 ORTHO05D020617 1.8e-17 94.7 325 28.6
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-17 94.7 293 28.7
FvH4_1g03530 Fragaria vesca HOM05D006732 ORTHO05D005682 5.1e-17 93.2 146 43.2
Dinv24224 Davidia involucrata HOM05D015193 ORTHO05D005682 2.5e-16 90.9 392 26.3
FAN10G3871 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.5e-16 90.9 314 29.9
FAN12G0204 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-16 90.9 105 45.7
Dinv24221 Davidia involucrata HOM05D015193 ORTHO05D005682 3.3e-16 90.5 199 32.7
FAN03G1932 Fragaria x ananassa HOM05D018501 ORTHO05D020617 3.3e-16 90.5 361 27.1
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.3e-16 90.5 263 28.5
FAN10G3441 Fragaria x ananassa HOM05D008398 ORTHO05D005682 3.3e-16 90.5 310 29.7
FAN06G3455 Fragaria x ananassa HOM05D010677 ORTHO05D012678 4.3e-16 90.1 423 24.8
FAN06G5012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 4.3e-16 90.1 425 24.0
FvH4_6g28610 Fragaria vesca HOM05D008398 ORTHO05D005682 7.4e-16 89.4 231 31.6
RcHm_v2.0_Chr2g0090221 Rosa chinensis HOM05D006732 ORTHO05D005682 7.4e-16 89.4 195 33.3
FAN10G3802 Fragaria x ananassa HOM05D008398 ORTHO05D035411 9.6e-16 89.0 233 30.9
FAN19G0291 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-15 88.6 191 36.6
FAN15G2539 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.6e-15 88.2 320 29.7
FAN01G1167 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.1e-15 87.8 315 26.0
FAN03G0822 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.7e-15 87.0 162 34.6
FvH4_1g04991 Fragaria vesca HOM05D006732 ORTHO05D005682 1.2e-13 82.0 147 42.2
FAN01G0845 Fragaria x ananassa HOM05D008398 ORTHO05D029520 1.5e-13 81.6 225 29.3
FAN19G1354 Fragaria x ananassa HOM05D006732 ORTHO05D035266 1.5e-13 81.6 164 38.4
FAN28G2349 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-13 80.9 120 39.2
FAN28G2648 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-13 80.9 120 39.2
FAN06G2795 Fragaria x ananassa HOM05D008398 ORTHO05D046322 4.5e-13 80.1 253 28.5
RcHm_v2.0_Chr1g0323581 Rosa chinensis HOM05D012901 ORTHO05D022659 5.8e-13 79.7 229 27.5
RcHm_v2.0_Chr5g0014821 Rosa chinensis HOM05D006732 ORTHO05D005682 1.3e-12 78.6 381 24.7
QL02p081954 Quercus lobata HOM05D006732 ORTHO05D005682 1.7e-12 78.2 355 25.9
FvH4_7g31310 Fragaria vesca HOM05D000122 ORTHO05D012678 8.4e-12 75.9 285 24.9
FAN05G1573 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.9e-11 74.7 204 32.8
FAN03G1797 Fragaria x ananassa HOM05D008398 ORTHO05D029520 7.1e-11 72.8 230 29.6
FAN03G3131 Fragaria x ananassa HOM05D008398 ORTHO05D029520 7.1e-11 72.8 230 29.6
FvH4_1g04910 Fragaria vesca HOM05D006732 ORTHO05D046085 3.5e-10 70.5 54 51.9
FvH4_4g06202 Fragaria vesca HOM05D006732 ORTHO05D005682 4.6e-10 70.1 58 51.7
FAN19G2861 Fragaria x ananassa HOM05D006732 ORTHO05D046085 7.9e-10 69.3 51 54.9
FAN23G1373 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.9e-10 69.3 48 64.6
FvH4_4g06201 Fragaria vesca HOM05D006732 ORTHO05D005682 3.0e-09 67.4 108 43.5
QL02p078454 Quercus lobata HOM05D006732 ORTHO05D005682 5.1e-09 66.6 181 30.4
FAN06G3593 Fragaria x ananassa HOM05D000122 ORTHO05D012678 1.1e-08 65.5 282 24.1
FAN06G4197 Fragaria x ananassa HOM05D000122 ORTHO05D012678 1.1e-08 65.5 282 24.1
AUR62043181 Chenopodium quinoa HOM05D062868 ORTHO05D044053 9.6e-08 62.4 92 41.3
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.6e-07 61.6 196 27.0
FvH4_4g00460 Fragaria vesca HOM05D031586 ORTHO05D045486 1.6e-07 61.6 252 28.6
Thecc.03G305700 Theobroma cacao HOM05D017991 ORTHO05D020493 4.8e-07 60.1 248 26.6
TWI12G1353 Tripterygium wilfordii HOM05D022892 ORTHO05D014676 1.1e-06 58.9 161 27.3
FAN25G1334 Fragaria x ananassa HOM05D031336 ORTHO05D029596 1.4e-06 58.5 71 40.8
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 1.4e-06 58.5 162 30.9
Haze_14978 Corylus avellana HOM05D008391 ORTHO05D009743 3.1e-06 57.4 83 41.0
TWI79G1583 Tripterygium wilfordii HOM05D022892 ORTHO05D014676 3.1e-06 57.4 115 35.7


User provided reference genes

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