Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090631 Rosa chinensis HOM05D006732 ORTHO05D005682 2.1e-260 901.7 431 100.0
RcHm_v2.0_Chr7g0225411 Rosa chinensis HOM05D006732 ORTHO05D005682 5.4e-224 780.8 432 86.8
FAN19G0447 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.0e-167 590.9 436 67.2
FAN23G0913 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.0e-165 586.3 435 66.2
FvH4_1g04892 Fragaria vesca HOM05D006732 ORTHO05D005682 9.8e-165 583.9 436 67.0
FvH4_1g04981 Fragaria vesca HOM05D006732 ORTHO05D005682 2.2e-164 582.8 436 66.1
FAN23G1322 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.4e-163 579.3 436 65.4
FAN19G2793 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-162 577.0 435 66.0
FvH4_1g04870 Fragaria vesca HOM05D006732 ORTHO05D005682 2.8e-156 555.8 384 68.2
FAN19G1623 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.6e-153 544.3 433 64.9
FAN26G1852 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.9e-152 543.1 435 64.4
FAN26G0144 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.1e-151 538.1 433 64.2
FAN26G0599 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.2e-150 535.0 433 66.1
FAN26G0545 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-147 527.3 430 65.1
FvH4_1g04982 Fragaria vesca HOM05D006732 ORTHO05D005682 9.5e-144 514.2 438 61.6
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.9e-142 507.7 467 58.5
FAN23G2814 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.9e-142 507.7 467 58.5
FvH4_5g09240 Fragaria vesca HOM05D006732 ORTHO05D005682 2.1e-138 496.5 441 60.5
RcHm_v2.0_Chr2g0088891 Rosa chinensis HOM05D006732 ORTHO05D005682 1.5e-136 490.3 458 57.2
FAN08G0591 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.3e-136 488.8 389 63.2
FAN18G2797 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-133 479.6 427 59.3
RcHm_v2.0_Chr2g0090681 Rosa chinensis HOM05D006732 ORTHO05D005682 1.0e-129 467.6 383 61.6
FAN19G0608 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-126 457.2 332 66.0
FAN19G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.4e-125 452.6 391 62.1
FvH4_1g07310 Fragaria vesca HOM05D006732 ORTHO05D005682 1.7e-124 450.3 425 56.9
FvH4_1g04980 Fragaria vesca HOM05D006732 ORTHO05D005682 2.2e-124 449.9 393 62.1
FAN23G0359 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.2e-123 446.0 391 61.4
FvH4_1g07350 Fragaria vesca HOM05D006732 ORTHO05D005682 2.3e-121 439.9 419 56.8
FvH4_1g05020 Fragaria vesca HOM05D006732 ORTHO05D005682 5.3e-118 428.7 340 60.9
FAN13G2469 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.9e-118 428.3 362 60.2
FvH4_1g04650 Fragaria vesca HOM05D006732 ORTHO05D005682 9.9e-109 397.9 387 50.9
FAN03G1911 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.3e-107 391.3 389 51.4
FAN19G1839 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.7e-105 384.8 380 50.3
FAN23G1448 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.6e-98 362.5 381 49.3
FAN19G1442 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.9e-96 357.1 388 48.7
FAN23G0775 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.4e-94 350.1 358 50.8
RcHm_v2.0_Chr4g0406891 Rosa chinensis HOM05D006732 ORTHO05D005682 4.6e-82 309.3 405 44.9
FvH4_5g09163 Fragaria vesca HOM05D006732 ORTHO05D005682 6.1e-82 308.9 218 67.4
FAN28G0011 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.1e-82 308.9 390 44.1
FAN26G1230 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-78 297.7 352 45.5
FvH4_1g03120 Fragaria vesca HOM05D006732 ORTHO05D005682 1.7e-71 274.2 373 43.4
FAN19G1106 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-71 273.5 412 41.0
FvH4_1g03870 Fragaria vesca HOM05D006732 ORTHO05D005682 4.8e-71 272.7 258 53.9
FvH4_1g03650 Fragaria vesca HOM05D006732 ORTHO05D005682 2.7e-66 256.9 410 38.8
FAN23G0993 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.7e-66 256.9 164 71.3
FAN26G2548 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.9e-65 253.1 328 43.0
FAN06G2841 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.1e-62 243.0 382 42.7
FAN06G4694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.1e-62 243.0 382 42.7
FAN26G2691 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-60 238.0 171 63.7
FvH4_7g04610 Fragaria vesca HOM05D006732 ORTHO05D005682 3.8e-60 236.5 382 41.9
FAN03G3183 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.9e-59 234.2 371 42.6
FvH4_1g03800 Fragaria vesca HOM05D006732 ORTHO05D005682 4.7e-58 229.6 423 38.8
FAN26G0550 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-57 227.6 163 63.2
FvH4_1g04850 Fragaria vesca HOM05D006732 ORTHO05D005682 5.2e-57 226.1 189 55.0
FAN01G2330 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.8e-56 221.9 381 41.5
RcHm_v2.0_Chr2g0090141 Rosa chinensis HOM05D006732 ORTHO05D005682 7.2e-51 205.7 164 60.4
FAN28G2932 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-49 201.1 204 51.5
FAN26G3406 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-47 194.9 203 51.7
FAN19G1133 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-45 188.0 406 35.2
FAN10G1871 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-44 184.9 280 45.0
FAN26G1044 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.7e-44 184.5 344 36.0
FAN14G2290 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-41 174.9 345 37.1
FAN19G1213 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-41 174.5 389 34.4
RcHm_v2.0_Chr2g0089871 Rosa chinensis HOM05D006732 ORTHO05D005682 2.3e-41 174.1 140 57.9
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-40 171.8 383 36.0
FvH4_1g03730 Fragaria vesca HOM05D006732 ORTHO05D005682 7.5e-40 169.1 262 38.5
FAN19G2470 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.8e-37 159.1 336 34.2
FvH4_6g38540 Fragaria vesca HOM05D006732 ORTHO05D005682 5.0e-36 156.4 402 31.8
FvH4_1g07301 Fragaria vesca HOM05D006732 ORTHO05D005682 1.8e-33 147.9 104 63.5
RcHm_v2.0_Chr1g0379901 Rosa chinensis HOM05D008398 ORTHO05D005682 1.7e-31 141.4 418 30.6
FAN08G2174 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.4e-31 139.4 101 66.3
FAN28G1694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.9e-30 137.9 170 45.3
MD02G1004600 Malus domestica HOM05D006732 ORTHO05D005682 4.1e-30 136.7 354 33.1
FvH4_3g44180 Fragaria vesca HOM05D031336 ORTHO05D029596 2.7e-29 134.0 461 25.4
FAN11G3653 Fragaria x ananassa HOM05D031336 ORTHO05D029596 2.7e-29 134.0 461 25.4
FAN28G1562 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-28 131.7 78 74.4
RcHm_v2.0_Chr1g0379941 Rosa chinensis HOM05D008398 ORTHO05D005682 1.7e-28 131.3 420 28.8
FAN05G0770 Fragaria x ananassa HOM05D008398 ORTHO05D005682 6.6e-28 129.4 351 33.3
FAN19G1906 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-27 127.5 147 44.2
RcHm_v2.0_Chr1g0380941 Rosa chinensis HOM05D006732 ORTHO05D005682 3.3e-27 127.1 427 28.8
RcHm_v2.0_Chr1g0329851 Rosa chinensis HOM05D006732 ORTHO05D005682 4.3e-27 126.7 209 41.6
RcHm_v2.0_Chr1g0376501 Rosa chinensis HOM05D008398 ORTHO05D005682 4.3e-27 126.7 269 35.3
FAN23G1684 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.1e-26 124.4 177 39.0
FAN19G1560 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.7e-26 123.2 178 46.1
Prupe.7G110000 Prunus persica HOM05D006732 ORTHO05D005682 7.5e-24 115.9 278 32.0
FvH4_5g34640 Fragaria vesca HOM05D008398 ORTHO05D005682 4.9e-23 113.2 323 31.6
FvH4_7g30481 Fragaria vesca HOM05D008398 ORTHO05D029520 8.3e-23 112.5 332 31.3
FvH4_6g50450 Fragaria vesca HOM05D008398 ORTHO05D005682 1.9e-22 111.3 361 30.7
FAN03G3389 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.4e-22 110.9 356 28.1
FAN06G4869 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.4e-22 110.9 331 29.0
FAN19G3146 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.2e-22 110.5 203 36.0
FAN23G2570 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.2e-22 110.5 82 58.5
RcHm_v2.0_Chr5g0043771 Rosa chinensis HOM05D018501 ORTHO05D020617 3.2e-22 110.5 343 28.6
FvH4_6g52510 Fragaria vesca HOM05D013417 ORTHO05D022618 4.1e-22 110.2 323 30.7
RcHm_v2.0_Chr5g0043731 Rosa chinensis HOM05D018501 ORTHO05D020617 4.1e-22 110.2 386 28.5
FAN06G0523 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.1e-21 107.8 329 31.3
FAN06G3627 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.1e-21 107.8 323 29.4
FAN03G1932 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.7e-21 107.5 328 28.0
FAN03G2148 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.7e-21 107.5 325 28.3
FAN01G2543 Fragaria x ananassa HOM05D008398 ORTHO05D046348 4.6e-21 106.7 321 30.5
FAN26G3385 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.6e-21 106.7 137 43.1
FAN06G1563 Fragaria x ananassa HOM05D018501 ORTHO05D020617 6.0e-21 106.3 331 28.7
RcHm_v2.0_Chr1g0337091 Rosa chinensis HOM05D010677 ORTHO05D012678 7.8e-21 105.9 275 32.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.7e-20 104.8 426 25.8
FAN09G2688 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.7e-20 104.8 314 30.6
FAN14G4819 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.7e-20 104.8 378 29.1
FvH4_7g04500 Fragaria vesca HOM05D018501 ORTHO05D020617 2.3e-20 104.4 332 28.3
FvH4_7g30470 Fragaria vesca HOM05D008398 ORTHO05D046348 3.0e-20 104.0 326 29.4
FvH4_5g09162 Fragaria vesca HOM05D006732 ORTHO05D005682 3.9e-20 103.6 154 46.8
FAN10G3441 Fragaria x ananassa HOM05D008398 ORTHO05D005682 3.9e-20 103.6 333 29.4
FAN23G1145 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.1e-20 103.2 68 69.1
FAN23G1506 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.1e-20 103.2 78 60.3
FAN14G4282 Fragaria x ananassa HOM05D013417 ORTHO05D022618 6.6e-20 102.8 318 30.5
FvH4_7g27001 Fragaria vesca HOM05D010677 ORTHO05D012678 1.1e-19 102.1 423 25.8
FvH4_7g31670 Fragaria vesca HOM05D010677 ORTHO05D012678 1.1e-19 102.1 288 30.6
FAN18G3618 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.1e-19 102.1 360 28.3
FvH4_7g31682 Fragaria vesca HOM05D010677 ORTHO05D012678 1.9e-19 101.3 288 30.6
FAN10G0863 Fragaria x ananassa HOM05D008398 ORTHO05D005682 3.3e-19 100.5 267 32.2
FvH4_1g03530 Fragaria vesca HOM05D006732 ORTHO05D005682 4.3e-19 100.1 190 38.4
FAN10G3871 Fragaria x ananassa HOM05D008398 ORTHO05D005682 4.3e-19 100.1 338 29.0
Prupe.2G176100 Prunus persica HOM05D006732 ORTHO05D005682 4.3e-19 100.1 216 35.2
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.6e-19 99.8 298 30.2
Prupe.6G029800 Prunus persica HOM05D006732 ORTHO05D005682 7.3e-19 99.4 206 32.0
FAN04G2845 Fragaria x ananassa HOM05D010677 ORTHO05D012678 9.5e-19 99.0 422 26.1
FAN23G1741 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.5e-19 99.0 134 43.3
FAN15G3012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.2e-18 98.6 289 31.5
RcHm_v2.0_Chr1g0337131 Rosa chinensis HOM05D006732 ORTHO05D012678 4.7e-18 96.7 225 32.0
FvH4_6g28610 Fragaria vesca HOM05D008398 ORTHO05D005682 1.4e-17 95.1 259 32.0
FAN10G3802 Fragaria x ananassa HOM05D008398 ORTHO05D035411 3.1e-17 94.0 240 31.2
FAN15G2539 Fragaria x ananassa HOM05D008398 ORTHO05D005682 5.2e-17 93.2 327 28.4
FvH4_2g38420 Fragaria vesca HOM05D013417 ORTHO05D022618 1.5e-16 91.7 330 29.7
FAN28G2349 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-16 91.7 118 43.2
FAN28G2648 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-16 91.7 118 43.2
FvH4_4g12220 Fragaria vesca HOM05D013417 ORTHO05D022618 2.6e-16 90.9 324 27.5
FAN10G1111 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.6e-16 90.9 306 26.8
QL02p081954 Quercus lobata HOM05D006732 ORTHO05D005682 4.4e-16 90.1 367 25.3
FAN03G1797 Fragaria x ananassa HOM05D008398 ORTHO05D029520 7.6e-16 89.4 255 30.6
FAN03G3131 Fragaria x ananassa HOM05D008398 ORTHO05D029520 7.6e-16 89.4 255 30.6
FAN12G2017 Fragaria x ananassa HOM05D013417 ORTHO05D022618 7.6e-16 89.4 323 27.2
FvH4_1g04991 Fragaria vesca HOM05D006732 ORTHO05D005682 1.3e-15 88.6 152 44.1
FvH4_7g31320 Fragaria vesca HOM05D010677 ORTHO05D012678 4.9e-15 86.7 358 25.4
FAN19G2055 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.9e-15 86.7 75 57.3
FAN12G0204 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.4e-15 86.3 105 41.9
FAN01G0845 Fragaria x ananassa HOM05D008398 ORTHO05D029520 8.4e-15 85.9 249 30.1
FAN01G2094 Fragaria x ananassa HOM05D008398 ORTHO05D029494 8.4e-15 85.9 324 26.2
FvH4_7g31260 Fragaria vesca HOM05D010677 ORTHO05D012678 1.1e-14 85.5 209 31.1
FAN19G1354 Fragaria x ananassa HOM05D006732 ORTHO05D035266 1.1e-14 85.5 201 36.3
FAN06G2579 Fragaria x ananassa HOM05D008398 ORTHO05D029494 3.2e-14 84.0 324 25.9
FAN06G1115 Fragaria x ananassa HOM05D010677 ORTHO05D012678 4.1e-14 83.6 209 30.1
FAN06G1601 Fragaria x ananassa HOM05D010677 ORTHO05D012678 4.1e-14 83.6 209 30.1
FAN19G0291 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.4e-14 83.2 162 35.8
FvH4_7g12650 Fragaria vesca HOM05D008398 ORTHO05D029494 1.2e-13 82.0 324 25.6
FvH4_4g36820 Fragaria vesca HOM05D008398 ORTHO05D005682 2.7e-13 80.9 316 27.5
FAN03G0822 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.7e-13 80.9 170 32.9
FAN18G2036 Fragaria x ananassa HOM05D013417 ORTHO05D005682 3.5e-13 80.5 286 30.1
FAN06G0070 Fragaria x ananassa HOM05D008398 ORTHO05D029494 4.6e-13 80.1 324 25.3
FAN10G3231 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.6e-13 80.1 297 25.6
FAN23G1373 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.6e-13 80.1 82 47.6
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.8e-13 79.3 271 27.3
FAN05G1573 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.0e-12 79.0 199 36.2
FAN12G2010 Fragaria x ananassa HOM05D013417 ORTHO05D022618 2.3e-12 77.8 318 26.1
FAN14G2930 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.3e-12 77.8 340 25.9
FvH4_1g04520 Fragaria vesca HOM05D006732 ORTHO05D005682 1.5e-11 75.1 339 22.4
FAN06G5012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.3e-11 73.9 289 28.0
FAN19G2109 Fragaria x ananassa HOM05D009798 ORTHO05D001056 4.3e-11 73.6 62 59.7
FvH4_4g06202 Fragaria vesca HOM05D006732 ORTHO05D005682 4.7e-10 70.1 55 52.7
FAN19G0514 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.7e-10 70.1 67 52.2
FvH4_1g04910 Fragaria vesca HOM05D006732 ORTHO05D046085 6.2e-10 69.7 54 57.4
FAN19G2861 Fragaria x ananassa HOM05D006732 ORTHO05D046085 1.1e-09 68.9 51 60.8
FAN06G3455 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.4e-09 67.8 306 26.5
FvH4_4g06201 Fragaria vesca HOM05D006732 ORTHO05D005682 3.1e-09 67.4 112 42.0
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 4.4e-08 63.5 164 28.7
FvH4_6g28541 Fragaria vesca HOM05D008398 ORTHO05D005682 5.8e-08 63.2 163 30.1
FvH4_7g28941 Fragaria vesca HOM05D006732 ORTHO05D005682 9.9e-08 62.4 145 32.4
FvH4_1g03720 Fragaria vesca HOM05D006732 ORTHO05D035266 1.3e-07 62.0 134 35.8
FAN01G1167 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-07 61.6 101 32.7
Lju1319C0T4 Lonicera japonica HOM05D028833 ORTHO05D012833 2.9e-07 60.8 175 28.6
FvH4_7g31310 Fragaria vesca HOM05D000122 ORTHO05D012678 3.8e-07 60.5 114 31.6
Lju1319C1T3 Lonicera japonica HOM05D028833 ORTHO05D012833 3.8e-07 60.5 146 30.1
FAN12G2497 Fragaria x ananassa HOM05D013417 ORTHO05D005682 4.9e-07 60.1 175 30.9
FAN12G0321 Fragaria x ananassa HOM05D013417 ORTHO05D005682 8.4e-07 59.3 175 30.9
FAN23G0757 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-07 59.3 111 41.4
FAN19G0789 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-06 58.5 32 84.4
FAN25G1334 Fragaria x ananassa HOM05D031336 ORTHO05D029596 1.9e-06 58.2 70 35.7
Rhsim04G0245000 Rhododendron simsii HOM05D019272 ORTHO05D020252 5.4e-06 56.6 212 25.9


User provided reference genes

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