Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090591 Rosa chinensis HOM05D003123 ORTHO05D003492 7.9e-76 287.0 138 100.0
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 6.5e-62 240.7 131 89.3
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 6.5e-62 240.7 131 89.3
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 5.5e-61 237.7 131 88.5
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.7e-57 226.1 147 77.6
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 5.5e-53 211.1 145 75.9
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.1e-52 209.1 150 73.3
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 3.1e-40 168.7 130 67.7
FAN07G0983 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.7e-31 139.0 77 85.7
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 4.2e-29 131.7 132 54.5
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 1.0e-27 127.1 149 50.3
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 1.0e-27 127.1 90 70.0
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 1.8e-27 126.3 80 77.5
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 5.2e-27 124.8 78 74.4
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 1.2e-26 123.6 78 73.1
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 1.5e-26 123.2 80 75.0
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.0e-26 122.9 86 70.9
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 4.4e-26 121.7 79 72.2
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 5.7e-26 121.3 85 70.6
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 7.5e-26 120.9 84 71.4
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 7.5e-26 120.9 81 70.4
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 7.5e-26 120.9 81 70.4
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 7.5e-26 120.9 86 68.6
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 1.7e-25 119.8 80 68.8
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.2e-25 119.4 85 69.4
FAN28G0861 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.2e-25 119.4 83 71.1
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 2.2e-25 119.4 83 69.9
SGA_v2.0_scaffold413G51179 Striga asiatica HOM05D003123 ORTHO05D003492 4.9e-25 118.2 76 71.1
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.1e-24 117.1 80 71.2
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 1.4e-24 116.7 82 67.1
MD15G1186700 Malus domestica HOM05D003123 ORTHO05D003492 1.4e-24 116.7 85 68.2
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.4e-24 116.7 84 67.9
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.8e-24 116.3 79 69.6
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 1.8e-24 116.3 79 68.4
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 2.4e-24 115.9 82 69.5
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 2.4e-24 115.9 82 68.3
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 3.2e-24 115.5 85 65.9
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 3.2e-24 115.5 82 65.9
SalBow1G3093 Salvia bowleyana HOM05D003123 ORTHO05D003492 4.1e-24 115.2 77 71.4
Cpa.g.sc66.20 Carica papaya HOM05D003123 ORTHO05D003492 5.4e-24 114.8 84 66.7
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 5.4e-24 114.8 85 68.2
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 5.4e-24 114.8 128 48.4
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 7.0e-24 114.4 82 67.1
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 1.2e-23 113.6 78 69.2
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.6e-23 113.2 78 67.9
FvH4_1g27520 Fragaria vesca HOM05D003123 ORTHO05D003492 1.6e-23 113.2 63 88.9
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.6e-23 113.2 81 71.6
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 1.6e-23 113.2 81 71.6
SalBow1G3749 Salvia bowleyana HOM05D003123 ORTHO05D003492 1.6e-23 113.2 78 70.5
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 2.7e-23 112.5 84 64.3
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.7e-23 112.5 80 68.8
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 3.5e-23 112.1 80 67.5
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 3.5e-23 112.1 85 64.7
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 4.6e-23 111.7 75 70.7
ATR1136G200 Amborella trichopoda HOM05D003123 ORTHO05D003492 5.9e-23 111.3 155 42.6
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 5.9e-23 111.3 82 65.9
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 1.0e-22 110.5 78 66.7
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 1.0e-22 110.5 81 66.7
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.3e-22 110.2 80 66.2
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.3e-22 110.2 80 66.2
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 1.3e-22 110.2 77 68.8
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 1.7e-22 109.8 86 64.0
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 2.9e-22 109.0 80 63.8
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.9e-22 109.0 80 66.2
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 5.0e-22 108.2 79 69.6
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 6.6e-22 107.8 80 65.0
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 6.6e-22 107.8 81 64.2
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 8.6e-22 107.5 86 62.8
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 8.6e-22 107.5 86 62.8
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.1e-21 107.1 76 63.2
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.1e-21 107.1 76 63.2
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 1.5e-21 106.7 75 65.3
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 1.9e-21 106.3 80 62.5
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 2.5e-21 105.9 78 64.1
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 2.5e-21 105.9 76 61.8
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 2.5e-21 105.9 80 61.2
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 2.5e-21 105.9 81 64.2
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 3.3e-21 105.5 82 63.4
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 3.3e-21 105.5 76 67.1
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 5.6e-21 104.8 80 63.8
Lalb_Chr04g0264161 Lupinus albus HOM05D003123 ORTHO05D003492 9.5e-21 104.0 81 60.5
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 2.8e-20 102.4 72 65.3
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 3.6e-20 102.1 85 60.0
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 4.7e-20 101.7 88 54.5
unitig_0.g2667 Utricularia gibba HOM05D003123 ORTHO05D003492 6.1e-20 101.3 78 64.1
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 1.4e-19 100.1 81 61.7
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 1.8e-19 99.8 83 57.8
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 1.8e-19 99.8 76 61.8
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 2.3e-19 99.4 80 61.2
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 8.9e-19 97.4 78 60.3
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 1.2e-18 97.1 78 60.3
A07p30420 Brassica napus HOM05D003123 ORTHO05D003492 1.2e-18 97.1 82 59.8
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 1.2e-18 97.1 78 60.3
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 1.2e-18 97.1 78 60.3
BraA07t30679Z Brassica rapa HOM05D003123 ORTHO05D003492 1.2e-18 97.1 82 59.8
Aa31LG4G8580 Aethionema arabicum HOM05D003123 ORTHO05D003492 1.5e-18 96.7 84 59.5
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 1.5e-18 96.7 89 57.3
ECA234G4206 Erigeron canadensis HOM05D001066 ORTHO05D000891 1.5e-18 96.7 75 64.0
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 2.0e-18 96.3 78 61.5
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 2.0e-18 96.3 78 61.5
CARHR064860 Cardamine hirsuta HOM05D003123 ORTHO05D003492 5.8e-18 94.7 78 61.5
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 5.8e-18 94.7 77 61.0
EL10Ac3g07342 Beta vulgaris HOM05D003123 ORTHO05D003492 9.8e-18 94.0 82 58.5
Os02g0116000 Oryza sativa ssp. japonica HOM05D003123 ORTHO05D003492 1.7e-17 93.2 77 58.4
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 2.2e-17 92.8 70 62.9
THA.LOC104800122 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 3.7e-17 92.0 89 55.1
HPP92_013254 Vanilla planifolia HOM05D003123 ORTHO05D003492 8.3e-17 90.9 85 51.8
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 1.4e-16 90.1 80 57.5
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 7.0e-16 87.8 114 45.6
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.0e-15 86.3 73 58.9
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 3.5e-15 85.5 63 65.1
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 6.0e-15 84.7 84 54.8
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 1.7e-14 83.2 113 44.2
CDE04G2204 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 8.6e-14 80.9 83 50.6
Zm00001eb265630 Zea mays HOM05D003123 ORTHO05D003492 8.6e-14 80.9 81 51.9
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 2.1e-12 76.3 116 35.3
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 2.8e-12 75.9 99 42.4
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 8.1e-12 74.3 57 59.6
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 1.4e-11 73.6 105 36.2
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 1.8e-11 73.2 104 38.5
HPP92_013245 Vanilla planifolia HOM05D003123 ORTHO05D003492 2.3e-11 72.8 65 52.3
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 3.1e-11 72.4 78 48.7
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 4.0e-11 72.0 112 38.4
RcHm_v2.0_Chr1g0336331 Rosa chinensis HOM05D003123 ORTHO05D003492 1.5e-10 70.1 41 82.9
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 1.5e-10 70.1 98 44.9
Hund19062 Selenicereus undatus HOM05D003123 ORTHO05D003492 2.6e-10 69.3 37 75.7
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 4.4e-10 68.6 39 69.2
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 4.4e-10 68.6 58 58.6
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 4.4e-10 68.6 45 62.2
RcHm_v2.0_Chr6g0290001 Rosa chinensis HOM05D003123 ORTHO05D003492 4.4e-10 68.6 41 82.9
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 4.4e-10 68.6 39 69.2
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 7.5e-10 67.8 52 57.7
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 1.3e-09 67.0 79 46.8
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 2.9e-09 65.9 41 68.3
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 2.9e-09 65.9 39 66.7
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 4.9e-09 65.1 35 74.3
Atru.chr8.2641 Acer truncatum HOM05D007367 ORTHO05D008866 6.4e-09 64.7 70 48.6
Prupe.4G066100 Prunus persica HOM05D003123 ORTHO05D003492 6.4e-09 64.7 36 80.6
ATR0733G234 Amborella trichopoda HOM05D003123 ORTHO05D003492 8.3e-09 64.3 58 51.7
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 2.4e-08 62.8 38 71.1
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 7.1e-08 61.2 49 61.2
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 7.1e-08 61.2 93 41.9
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 1.6e-07 60.1 34 82.4
Rhsim06G0030700 Rhododendron simsii HOM05D003123 ORTHO05D003492 2.1e-07 59.7 57 57.9
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 1.0e-06 57.4 30 83.3
PSO339G1610 Papaver somniferum HOM05D003123 ORTHO05D003492 1.7e-06 56.6 34 73.5
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 3.0e-06 55.8 28 85.7
Ah.04g150240 Amaranthus hybridus HOM05D003123 ORTHO05D003492 6.6e-06 54.7 48 56.2
VMungo1080G1725 Vigna mungo HOM05D003123 ORTHO05D003492 6.6e-06 54.7 43 58.1
AL2G31680 Arabidopsis lyrata HOM05D003123 ORTHO05D003492 8.6e-06 54.3 108 37.0


User provided reference genes

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