Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 1.4e-41 172.6 87 100.0
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 4.1e-30 134.4 89 83.1
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 5.4e-30 134.0 88 80.7
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 7.8e-29 130.2 89 80.9
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 1.6e-18 95.9 87 66.7
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 2.1e-18 95.5 85 71.8
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 5.2e-17 90.9 81 66.7
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.5e-16 89.4 81 63.0
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 3.4e-16 88.2 84 71.4
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 2.9e-15 85.1 86 64.0
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.4e-14 82.8 86 64.0
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.4e-14 82.8 86 64.0
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 2.4e-14 82.0 85 62.4
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.2e-14 81.6 81 63.0
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 7.1e-14 80.5 85 61.2
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 7.1e-14 80.5 81 60.5
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.2e-13 79.7 85 61.2
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 7.8e-13 77.0 81 60.5
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.3e-12 76.3 61 65.6
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 3.9e-12 74.7 83 59.0
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 5.1e-12 74.3 54 64.8
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 8.7e-12 73.6 83 59.0
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 1.1e-11 73.2 83 61.4
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 1.1e-11 73.2 83 60.2
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.5e-11 72.0 75 58.7
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.5e-11 72.0 75 58.7
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 2.5e-11 72.0 74 64.9
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 4.3e-11 71.2 86 55.8
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 5.6e-11 70.9 76 57.9
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 1.3e-10 69.7 76 56.6
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 1.3e-10 69.7 83 55.4
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 2.1e-10 68.9 76 56.6
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 3.6e-10 68.2 85 55.3
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.1e-09 66.6 85 58.8
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 1.4e-09 66.2 89 51.7
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 1.8e-09 65.9 57 63.2
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 1.8e-09 65.9 79 54.4
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 3.1e-09 65.1 89 53.9
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 4.0e-09 64.7 72 55.6
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 4.0e-09 64.7 73 49.3
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 6.9e-09 63.9 85 52.9
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 6.9e-09 63.9 79 53.2
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 6.9e-09 63.9 73 56.2
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 2.0e-08 62.4 65 53.8
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 2.0e-08 62.4 70 50.0
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 2.0e-08 62.4 85 49.4
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 2.0e-08 62.4 77 49.4
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 2.6e-08 62.0 85 54.1
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 2.6e-08 62.0 73 54.8
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 3.4e-08 61.6 61 50.8
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 4.4e-08 61.2 59 59.3
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 4.4e-08 61.2 78 48.7
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 4.4e-08 61.2 77 45.5
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 9.9e-08 60.1 73 50.7
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 2.2e-07 58.9 51 60.8
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 2.9e-07 58.5 91 44.0
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 6.4e-07 57.4 78 52.6
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.1e-06 56.6 74 47.3
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 1.1e-06 56.6 83 50.6
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.1e-06 56.6 68 50.0
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 5.4e-06 54.3 51 58.8
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 5.4e-06 54.3 60 53.3
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 7.1e-06 53.9 46 60.9


User provided reference genes

Program Settings