Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.1e-30 136.0 70 100.0
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 6.9e-28 126.7 70 90.0
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.9e-28 126.7 70 90.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.4e-27 124.4 70 88.6
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.5e-27 124.0 70 88.6
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 2.2e-26 121.7 70 85.7
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 5.0e-26 120.6 70 84.3
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 5.0e-26 120.6 70 85.7
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 6.5e-26 120.2 69 84.1
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 1.4e-25 119.0 70 84.3
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 2.5e-25 118.2 70 82.9
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.6e-24 115.5 70 81.4
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 3.6e-24 114.4 68 80.9
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 8.8e-23 109.8 61 86.9
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.1e-22 109.4 68 77.9
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.5e-22 109.0 70 77.1
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.5e-22 109.0 68 76.5
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.5e-22 109.0 68 76.5
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 1.5e-22 109.0 70 71.4
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 2.0e-22 108.6 68 75.0
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 3.3e-22 107.8 68 77.9
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 4.4e-22 107.5 68 76.5
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.3e-21 105.9 61 85.2
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 1.3e-21 105.9 70 70.0
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.7e-21 104.4 69 75.4
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 1.8e-20 102.1 69 68.1
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 9.1e-20 99.8 65 75.4
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 9.1e-20 99.8 65 75.4
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 2.6e-19 98.2 68 70.6
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 3.4e-19 97.8 70 72.9
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 3.4e-19 97.8 70 67.1
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 5.9e-19 97.1 70 65.7
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 5.9e-19 97.1 70 61.4
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.0e-18 96.3 67 68.7
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.2e-18 95.1 68 67.6
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.8e-18 94.4 70 65.7
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.8e-18 94.4 70 65.7
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 5.0e-18 94.0 70 67.1
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 62.9
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 8.5e-18 93.2 68 63.2
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.4e-17 92.4 67 67.2
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-17 92.4 70 64.3
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 67 65.7
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 9.4e-17 89.7 68 64.7
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.7e-16 88.2 68 63.2
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 3.6e-16 87.8 68 66.2
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 6.1e-16 87.0 66 62.1
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 1.0e-15 86.3 70 64.3
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.4e-15 85.9 60 66.7
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 3.0e-15 84.7 68 63.2
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 55.7
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 2.6e-14 81.6 70 55.7
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.6e-14 81.6 67 62.7
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 57.1
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 57.1
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 7.4e-14 80.1 61 63.9
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 2.2e-13 78.6 70 54.3
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 2.2e-13 78.6 66 56.1
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 3.7e-13 77.8 67 53.7
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 3.7e-13 77.8 70 52.9
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 4.8e-13 77.4 66 54.5
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 1.4e-12 75.9 70 50.0
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.4e-12 75.9 68 57.4
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.8e-12 75.5 74 63.5
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 4.1e-12 74.3 66 54.5
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 1.2e-11 72.8 68 58.8
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 1.2e-11 72.8 53 58.5
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 3.5e-11 71.2 65 55.4
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.7e-11 70.1 71 50.7
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 7.7e-11 70.1 65 53.8
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.7e-10 68.9 71 50.7
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 2.9e-10 68.2 72 51.4
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 2.9e-10 68.2 65 47.7
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 5.0e-10 67.4 70 48.6
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 5.0e-10 67.4 66 48.5
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.1e-09 66.2 70 45.7
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 9.4e-09 63.2 60 51.7
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 3.6e-08 61.2 74 40.5
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 2.3e-07 58.5 68 47.1
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 4.0e-07 57.8 50 62.0
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 2.0e-06 55.5 68 44.1


User provided reference genes

Program Settings