Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 3.5e-77 291.6 150 100.0
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 5.6e-75 284.3 150 97.3
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 4.7e-66 254.6 140 92.9
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 5.2e-65 251.1 142 89.4
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.7e-63 246.1 140 89.3
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.0e-60 235.3 140 82.1
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 1.9e-59 232.6 138 84.1
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 5.6e-59 231.1 138 81.2
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 9.5e-59 230.3 140 79.3
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 2.1e-58 229.2 138 82.6
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 6.2e-58 227.6 138 80.4
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 8.1e-58 227.3 140 80.0
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 1.1e-57 226.9 140 79.3
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 1.4e-57 226.5 160 71.9
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.4e-57 226.5 138 81.9
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 1.8e-57 226.1 138 79.7
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.8e-57 226.1 138 79.7
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 4.0e-57 224.9 141 76.6
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 5.2e-57 224.6 141 78.7
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 6.8e-57 224.2 141 77.3
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 6.8e-57 224.2 140 79.3
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 8.9e-57 223.8 142 74.6
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 8.9e-57 223.8 138 79.7
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 1.5e-56 223.0 138 79.0
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 1.5e-56 223.0 138 78.3
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 1.5e-56 223.0 138 77.5
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 2.6e-56 222.2 138 78.3
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 4.4e-56 221.5 138 76.8
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 4.4e-56 221.5 138 79.7
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 5.8e-56 221.1 138 77.5
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 5.8e-56 221.1 138 75.4
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 5.8e-56 221.1 138 74.6
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 7.6e-56 220.7 138 76.1
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.3e-55 219.9 138 77.5
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 1.7e-55 219.5 143 73.4
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 1.7e-55 219.5 138 76.1
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.7e-55 219.5 140 75.7
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.2e-55 219.2 138 76.1
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 2.2e-55 219.2 138 76.8
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 4.9e-55 218.0 140 78.6
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 8.4e-55 217.2 141 77.3
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.1e-54 216.9 140 76.4
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 2.4e-54 215.7 138 76.8
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 2.4e-54 215.7 138 74.6
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 3.2e-54 215.3 130 80.8
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 3.2e-54 215.3 130 80.8
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 4.1e-54 214.9 138 74.6
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 4.1e-54 214.9 138 71.0
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 5.4e-54 214.5 138 74.6
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 1.2e-53 213.4 137 73.7
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 1.6e-53 213.0 140 71.4
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.7e-53 212.2 182 65.4
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 3.5e-53 211.8 139 74.8
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 7.8e-53 210.7 138 76.8
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.0e-52 210.3 138 73.9
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.0e-52 210.3 142 69.7
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.0e-52 210.3 140 71.4
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 1.0e-52 210.3 142 71.1
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 1.7e-52 209.5 138 73.9
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 2.3e-52 209.1 140 69.3
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 3.0e-52 208.8 130 76.2
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 5.1e-52 208.0 140 70.7
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 6.6e-52 207.6 138 71.0
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 8.6e-52 207.2 141 68.1
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.1e-51 206.8 135 72.6
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 1.1e-51 206.8 140 70.0
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 3.3e-51 205.3 138 75.4
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.2e-50 203.4 138 73.9
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 4.7e-50 201.4 138 73.2
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 4.0e-49 198.4 138 68.8
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 1.2e-48 196.8 132 70.5
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 1.5e-48 196.4 138 65.9
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 1.5e-48 196.4 138 68.1
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.6e-48 195.7 120 83.3
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 5.8e-48 194.5 142 72.5
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 7.6e-48 194.1 138 64.5
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.2e-47 192.6 138 63.8
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 4.9e-47 191.4 138 67.4
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 1.1e-46 190.3 138 62.3
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 1.9e-46 189.5 138 64.5
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 6.2e-42 174.5 154 59.7
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 4.3e-35 151.8 107 72.0
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 2.8e-34 149.1 87 86.2
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.4e-33 146.7 133 57.1
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 2.0e-32 142.9 86 81.4
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 4.9e-31 138.3 89 73.0
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.9e-30 136.3 81 77.8
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 3.2e-30 135.6 167 49.1
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 1.6e-29 133.3 74 91.9
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.3e-28 129.4 77 74.0
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.6e-26 123.2 152 46.7
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 1.6e-21 106.7 150 44.7
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.5e-21 105.5 131 38.2
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 5.1e-20 101.7 59 83.1
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 5.7e-19 98.2 60 78.3
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.1e-17 92.4 60 76.7
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 3.8e-15 85.5 62 74.2
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 5.0e-15 85.1 51 80.4
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 8.5e-15 84.3 148 39.9
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.9e-14 83.2 126 43.7
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 4.6e-13 78.6 40 97.5
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 3.0e-12 75.9 64 59.4
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 3.0e-12 75.9 141 36.2
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 3.9e-12 75.5 54 64.8
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 3.3e-11 72.4 144 35.4
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 9.7e-11 70.9 139 38.1
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 3.7e-10 68.9 144 34.0
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 1.4e-09 67.0 46 67.4
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 9.1e-09 64.3 58 53.4
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 6.5e-07 58.2 35 77.1
Migut.L00776 Erythranthe guttata HOM05D006972 ORTHO05D008519 5.5e-06 55.1 28 85.7


User provided reference genes

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