Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 5.7e-264 913.7 460 100.0
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.1e-233 813.1 464 90.5
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.4e-233 812.8 464 90.5
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 8.9e-233 810.1 464 89.9
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 4.9e-231 804.3 464 89.4
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 7.6e-208 727.2 468 80.3
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 5.7e-203 711.1 464 79.1
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.3e-193 677.9 390 90.3
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.0e-191 673.7 457 75.3
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.3e-191 673.3 457 75.3
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 2.9e-191 672.2 462 76.0
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.1e-190 670.2 458 74.9
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 1.5e-184 649.8 458 73.1
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 4.2e-182 641.7 462 73.8
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 5.5e-182 641.3 458 72.9
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 2.1e-181 639.4 461 72.7
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 4.7e-181 638.3 467 72.4
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 1.8e-180 636.3 464 70.0
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 2.3e-180 636.0 431 75.4
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 8.8e-180 634.0 464 71.6
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 2.0e-179 632.9 461 72.5
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 7.4e-179 630.9 453 72.4
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 4.8e-178 628.2 419 75.4
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 6.3e-178 627.9 466 69.7
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.6e-176 623.2 405 75.8
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 2.6e-176 622.5 467 71.5
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 2.6e-176 622.5 467 70.2
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 2.6e-176 622.5 456 70.8
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 3.5e-176 622.1 457 70.9
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 1.7e-175 619.8 465 70.5
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 2.9e-175 619.0 459 69.5
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 2.9e-175 619.0 461 71.6
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.8e-175 618.6 456 71.7
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 8.5e-175 617.5 397 78.1
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.1e-174 617.1 397 77.8
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.1e-174 617.1 456 71.7
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.5e-174 615.9 456 69.7
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 3.2e-174 615.5 465 69.0
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 3.2e-174 615.5 456 70.6
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 4.2e-174 615.1 461 69.6
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.6e-173 612.1 454 71.4
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 6.1e-173 611.3 399 75.9
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.4e-172 610.1 462 69.9
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 1.4e-172 610.1 456 69.7
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 2.3e-172 609.4 377 79.0
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 2.3e-172 609.4 456 69.7
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 6.7e-172 607.8 463 68.5
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 5.7e-171 604.7 466 68.5
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.7e-170 603.2 376 79.5
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 2.2e-170 602.8 399 74.9
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.7e-170 602.1 466 68.5
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 8.2e-170 600.9 456 69.1
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.1e-169 600.5 453 68.9
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 1.4e-169 600.1 397 74.8
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 1.4e-169 600.1 457 70.0
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.4e-169 600.1 466 68.2
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 2.0e-168 596.3 466 67.8
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 7.7e-168 594.3 461 69.0
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 7.7e-168 594.3 436 70.6
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 1.0e-167 594.0 484 65.1
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 1.3e-167 593.6 462 68.4
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 2.2e-167 592.8 460 68.9
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.5e-166 590.1 440 70.0
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 7.2e-166 587.8 460 66.5
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.2e-165 587.0 394 73.4
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 3.6e-165 585.5 375 75.7
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 4.7e-165 585.1 376 77.4
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 8.0e-165 584.3 448 69.0
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 2.3e-164 582.8 469 65.0
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 8.8e-164 580.9 455 66.2
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 2.6e-163 579.3 457 68.1
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 6.3e-162 574.7 457 66.5
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 6.3e-162 574.7 464 67.7
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 1.1e-161 573.9 458 66.6
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 1.4e-161 573.5 457 65.6
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.1e-161 572.4 454 67.8
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 3.8e-159 565.5 394 71.3
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.5e-158 563.5 381 74.0
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 8.0e-157 557.8 463 63.3
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.0e-156 557.4 398 70.9
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.0e-156 557.4 406 70.2
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.4e-156 557.0 401 70.3
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.4e-156 557.0 435 65.5
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.8e-156 556.6 430 67.4
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 6.8e-156 554.7 401 70.1
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 2.0e-155 553.1 453 63.6
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.6e-152 543.5 458 62.2
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.7e-152 542.7 395 70.1
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 5.9e-152 541.6 403 67.0
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 2.9e-151 539.3 449 65.3
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 8.6e-151 537.7 456 62.1
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.9e-150 536.6 397 67.5
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 7.3e-150 534.6 459 61.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 7.3e-150 534.6 459 61.2
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.4e-148 530.4 460 60.9
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 2.6e-147 526.2 460 60.2
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 2.6e-147 526.2 460 60.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 1.2e-141 507.3 457 58.6
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 8.0e-141 504.6 443 60.7
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 6.8e-140 501.5 397 64.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 7.0e-137 491.5 463 55.7
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 3.5e-136 489.2 316 75.9
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 8.3e-130 468.0 346 69.1
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 4.9e-114 415.6 355 62.3
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.6e-107 393.3 258 75.6
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 7.9e-104 381.7 445 47.9
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.8e-103 380.6 384 52.6
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.3e-101 374.4 386 49.2
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.3e-101 374.4 361 52.6
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 7.1e-97 358.6 370 52.4
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 5.3e-92 342.4 374 48.7
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.6e-77 294.3 382 46.1
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.8e-77 293.5 318 49.4
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.2e-75 288.1 337 46.3
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 6.7e-55 219.2 136 75.0
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.4e-52 211.5 255 48.2
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 9.2e-36 155.6 115 69.6
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 6.6e-34 149.4 97 71.1
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 5.8e-30 136.3 90 76.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.9e-29 134.0 90 75.6
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.8e-28 131.3 82 76.8
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.0e-27 127.9 354 30.2
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 3.5e-27 127.1 132 55.3
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.2e-24 118.6 81 71.6
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.8e-23 114.8 260 30.4
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.2e-23 113.2 132 54.5
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-22 110.5 74 75.7
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 9.2e-20 102.4 352 28.7
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.1e-17 95.5 123 50.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.1e-12 77.0 74 58.1
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.6e-11 73.6 126 40.5
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 1.6e-08 65.1 68 51.5
TPR.G36012 Trifolium pratense HOM05D005548 ORTHO05D007497 4.7e-08 63.5 122 40.2


User provided reference genes

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