Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 6.1e-43 177.2 96 100.0
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 9.2e-31 136.7 100 83.0
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.7e-30 135.2 100 82.0
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.3e-29 132.1 100 80.0
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.1e-26 123.2 93 80.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.6e-25 118.6 100 76.0
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 7.1e-23 110.5 100 72.0
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 6.0e-22 107.5 100 71.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 2.5e-20 102.1 102 63.7
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 5.6e-20 100.9 102 64.7
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 1.6e-19 99.4 99 63.6
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.6e-19 98.2 96 67.7
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 4.7e-19 97.8 99 60.6
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.8e-18 95.9 93 62.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.3e-18 95.5 100 64.0
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 8.9e-18 93.6 100 63.0
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 8.9e-18 93.6 100 61.0
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.2e-17 93.2 99 60.6
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.2e-17 93.2 99 61.6
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.2e-17 93.2 98 62.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.0e-17 92.4 98 63.3
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 2.6e-17 92.0 97 61.9
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 2.6e-17 92.0 95 62.1
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 3.4e-17 91.7 99 60.6
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 3.4e-17 91.7 100 61.0
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 4.4e-17 91.3 99 57.6
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 5.8e-17 90.9 104 63.5
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 7.6e-17 90.5 93 61.3
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.3e-16 89.7 91 65.9
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.7e-16 89.4 104 54.8
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 3.7e-16 88.2 95 60.0
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.9e-16 87.8 92 60.9
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 6.4e-16 87.4 93 61.3
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 8.3e-16 87.0 96 59.4
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 8.3e-16 87.0 95 57.9
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 8.3e-16 87.0 102 56.9
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 1.4e-15 86.3 97 60.8
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.9e-15 85.9 97 60.8
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.9e-15 85.9 103 61.2
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.9e-15 85.9 102 54.9
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 2.4e-15 85.5 100 57.0
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 2.4e-15 85.5 92 63.0
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 3.2e-15 85.1 101 56.4
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.2e-15 85.1 98 57.1
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.1e-15 84.7 92 59.8
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 5.4e-15 84.3 96 60.4
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 7.1e-15 84.0 95 61.1
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 7.1e-15 84.0 93 60.2
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 9.2e-15 83.6 94 58.5
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.2e-14 83.2 99 56.6
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.2e-14 83.2 102 55.9
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.6e-14 82.8 101 58.4
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 1.6e-14 82.8 101 54.5
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.1e-14 82.4 90 60.0
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 2.1e-14 82.4 99 54.5
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 2.7e-14 82.0 97 57.7
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 2.7e-14 82.0 95 60.0
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 2.7e-14 82.0 97 57.7
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 2.7e-14 82.0 97 57.7
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 2.7e-14 82.0 95 60.0
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.7e-14 82.0 94 58.5
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 4.6e-14 81.3 97 57.7
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 4.6e-14 81.3 97 57.7
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.0e-14 80.9 106 54.7
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 6.0e-14 80.9 101 53.5
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 7.8e-14 80.5 94 57.4
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 1.0e-13 80.1 96 57.3
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.0e-13 80.1 100 54.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.3e-13 79.7 86 60.5
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.7e-13 79.3 94 60.6
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.7e-13 79.3 52 78.8
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 2.3e-13 79.0 106 53.8
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 3.0e-13 78.6 96 55.2
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 3.0e-13 78.6 92 55.4
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.1e-12 76.6 101 52.5
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.1e-12 76.6 94 55.3
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.1e-12 76.6 102 52.0
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.5e-12 76.3 93 51.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.5e-12 76.3 112 50.9
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.9e-12 75.9 97 53.6
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.9e-12 75.9 92 55.4
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 2.5e-12 75.5 96 55.2
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.5e-12 75.5 93 52.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.5e-12 75.5 93 53.8
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 3.3e-12 75.1 92 57.6
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 4.3e-12 74.7 93 52.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.6e-11 72.8 87 55.2
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.1e-11 72.4 104 52.9
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.8e-11 72.0 47 76.6
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 3.6e-11 71.6 85 54.1
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 6.2e-11 70.9 104 52.9
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 8.1e-11 70.5 86 55.8
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 1.8e-10 69.3 81 58.0
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 5.2e-10 67.8 91 53.8
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 8.9e-10 67.0 92 54.3
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 4.4e-09 64.7 98 45.9
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 9.9e-09 63.5 47 70.2
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.3e-08 63.2 66 56.1
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.7e-08 62.8 74 55.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 3.8e-08 61.6 79 48.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.1e-07 60.1 76 48.7
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-07 60.1 72 47.2
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.4e-07 59.7 74 44.6
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.4e-07 59.7 74 44.6
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-07 59.7 72 47.2
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-07 59.7 72 47.2
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.9e-07 59.3 84 46.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.9e-07 59.3 73 43.8
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 1.9e-07 59.3 97 47.4
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 2.4e-07 58.9 68 45.6
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 4.2e-07 58.2 93 41.9
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 5.4e-07 57.8 67 49.3
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 5.4e-07 57.8 93 41.9
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 5.4e-07 57.8 53 56.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.4e-07 57.8 81 43.2
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 9.3e-07 57.0 66 53.0
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.1e-06 55.8 68 50.0
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.1e-06 55.8 69 47.8
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 2.1e-06 55.8 104 42.3
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.7e-06 55.5 69 44.9
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 2.7e-06 55.5 69 42.0
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 2.7e-06 55.5 91 41.8
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.7e-06 55.5 93 40.9
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 3.5e-06 55.1 95 38.9
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 3.5e-06 55.1 48 56.2
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 3.5e-06 55.1 105 38.1
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 3.5e-06 55.1 83 42.2
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 3.5e-06 55.1 86 44.2
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 3.5e-06 55.1 50 52.0
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 4.6e-06 54.7 76 44.7
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 4.6e-06 54.7 75 41.3
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.6e-06 54.7 53 52.8
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 6.0e-06 54.3 57 47.4
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 6.0e-06 54.3 91 40.7
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 6.0e-06 54.3 57 52.6
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 6.0e-06 54.3 84 41.7
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 6.0e-06 54.3 48 56.2
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 6.0e-06 54.3 66 47.0
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 6.0e-06 54.3 77 44.2
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 6.0e-06 54.3 48 56.2
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 7.8e-06 53.9 91 40.7
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 7.8e-06 53.9 69 43.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 7.8e-06 53.9 90 38.9
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 7.8e-06 53.9 92 41.3
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 7.8e-06 53.9 71 43.7
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 7.8e-06 53.9 69 43.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 7.8e-06 53.9 87 43.7
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 7.8e-06 53.9 97 44.3


User provided reference genes

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