Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0089341 Rosa chinensis HOM05D000639 ORTHO05D005966 1.5e-55 219.2 103 100.0
FvH4_1g03880 Fragaria vesca HOM05D000639 ORTHO05D005966 4.4e-39 164.5 84 90.5
FAN19G2956 Fragaria x ananassa HOM05D000639 ORTHO05D005966 4.4e-39 164.5 84 90.5
FAN23G1612 Fragaria x ananassa HOM05D000639 ORTHO05D005966 4.4e-39 164.5 84 90.5
RcHm_v2.0_Chr2g0089261 Rosa chinensis HOM05D000639 ORTHO05D005966 9.8e-39 163.3 84 89.3
FAN26G2108 Fragaria x ananassa HOM05D000639 ORTHO05D005966 1.7e-38 162.5 84 89.3
FAN28G2714 Fragaria x ananassa HOM05D000639 ORTHO05D005966 1.7e-38 162.5 84 89.3
Prupe.7G238300 Prunus persica HOM05D000639 ORTHO05D005966 1.2e-31 139.8 84 76.2
MD02G1037100 Malus domestica HOM05D000639 ORTHO05D005966 4.9e-30 134.4 84 72.6
MD15G1177300 Malus domestica HOM05D000639 ORTHO05D005966 4.1e-29 131.3 84 70.2
Manes.14G129300 Manihot esculenta HOM05D000639 ORTHO05D005966 1.5e-26 122.9 82 70.7
Cpa.g.sc75.68 Carica papaya HOM05D000639 ORTHO05D005966 2.5e-26 122.1 84 65.5
Cfa003336 Carpinus fangiana HOM05D000639 ORTHO05D005966 4.3e-26 121.3 84 65.5
Ciclev10008570m.g Citrus clementina HOM05D000639 ORTHO05D005966 4.3e-26 121.3 86 64.0
Dinv41542 Davidia involucrata HOM05D000639 ORTHO05D005966 4.3e-26 121.3 86 65.1
QL02p087443 Quercus lobata HOM05D000639 ORTHO05D005966 4.3e-26 121.3 83 67.5
CSS0009692 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D005966 5.6e-26 120.9 86 67.4
CSS0020792 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D005966 5.6e-26 120.9 86 67.4
Atru.chr7.1233 Acer truncatum HOM05D000639 ORTHO05D005966 7.3e-26 120.6 86 62.8
Actinidia26410 Actinidia chinensis HOM05D000639 ORTHO05D005966 7.3e-26 120.6 86 65.1
CiPaw.03G240200 Carya illinoinensis HOM05D000639 ORTHO05D005966 7.3e-26 120.6 84 64.3
Hma1.2p1_0665F.1_g199270 Hydrangea macrophylla HOM05D000639 ORTHO05D005966 7.3e-26 120.6 84 66.7
Hma1.2p1_0665F.1_g199260 Hydrangea macrophylla HOM05D000639 ORTHO05D005966 9.5e-26 120.2 83 66.3
Haze_25627 Corylus avellana HOM05D000639 ORTHO05D005966 1.2e-25 119.8 84 65.5
CSS0019283 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D005966 2.1e-25 119.0 86 67.4
Glyma.04G149600 Glycine max HOM05D000639 ORTHO05D005966 2.1e-25 119.0 84 64.3
Lj1g0006107 Lotus japonicus HOM05D000639 ORTHO05D005966 2.8e-25 118.6 84 64.3
Sabra18G0062100 Salix brachista HOM05D000639 ORTHO05D005966 2.8e-25 118.6 82 67.1
CiPaw.04G169600 Carya illinoinensis HOM05D000639 ORTHO05D005966 3.6e-25 118.2 84 63.1
TAR636G1882 Trochodendron aralioides HOM05D000639 ORTHO05D005966 3.6e-25 118.2 86 62.8
Hund09153 Selenicereus undatus HOM05D000639 ORTHO05D005966 4.7e-25 117.9 84 63.1
arahy.Tifrunner.gnm1.ann1.VA2Y9G Arachis hypogaea HOM05D000639 ORTHO05D005966 6.2e-25 117.5 85 64.7
Hma1.2p1_0018F.1_g012780 Hydrangea macrophylla HOM05D000639 ORTHO05D005966 6.2e-25 117.5 86 64.0
arahy.Tifrunner.gnm1.ann1.94NDDX Arachis hypogaea HOM05D000639 ORTHO05D005966 8.1e-25 117.1 85 64.7
Sc18g0000810 Simmondsia chinensis HOM05D000639 ORTHO05D005966 8.1e-25 117.1 86 62.8
Eucgr.C01117 Eucalyptus grandis HOM05D000639 ORTHO05D005966 1.1e-24 116.7 84 61.9
Phvul.009G198900 Phaseolus vulgaris HOM05D000639 ORTHO05D005966 1.4e-24 116.3 84 63.1
Glyma.06G215400 Glycine max HOM05D000639 ORTHO05D005966 1.8e-24 115.9 84 63.1
Rhsim03G0246100 Rhododendron simsii HOM05D000639 ORTHO05D005966 2.4e-24 115.5 86 64.0
Dinv36566 Davidia involucrata HOM05D000639 ORTHO05D005966 3.1e-24 115.2 84 65.5
Potri.018G071200 Populus trichocarpa HOM05D000639 ORTHO05D005966 3.1e-24 115.2 82 64.6
Rhsim01G0078300 Rhododendron simsii HOM05D000639 ORTHO05D005966 3.1e-24 115.2 86 65.1
VMungo1309G0730 Vigna mungo HOM05D000639 ORTHO05D005966 3.1e-24 115.2 84 63.1
GSVIVG01015488001 Vitis vinifera HOM05D000639 ORTHO05D005966 5.2e-24 114.4 82 62.2
TPR.G1683 Trifolium pratense HOM05D000639 ORTHO05D005966 6.8e-24 114.0 84 61.9
Thecc.09G121100 Theobroma cacao HOM05D000639 ORTHO05D005966 8.9e-24 113.6 84 60.7
Ca_30359_v3 Cicer arietinum L. HOM05D000639 ORTHO05D005966 1.2e-23 113.2 84 60.7
AUR62011074 Chenopodium quinoa HOM05D000639 ORTHO05D005966 1.5e-23 112.8 84 61.9
Duzib168G1933 Durio zibethinus HOM05D000639 ORTHO05D005966 1.5e-23 112.8 84 61.9
Gorai.009G020400 Gossypium raimondii HOM05D000639 ORTHO05D005966 1.5e-23 112.8 85 62.4
Ca_12333_v3 Cicer arietinum L. HOM05D000639 ORTHO05D005966 2.0e-23 112.5 98 54.1
Duzib187G1143 Durio zibethinus HOM05D000639 ORTHO05D005966 2.0e-23 112.5 84 63.1
MBI01_g37953_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D005966 2.0e-23 112.5 90 55.6
vmacro20652 Vaccinium macrocarpon HOM05D000639 ORTHO05D005966 2.0e-23 112.5 86 62.8
Actinidia40445 Actinidia chinensis HOM05D000639 ORTHO05D005966 2.6e-23 112.1 86 64.0
Gohir.A05G019000 Gossypium hirsutum HOM05D000639 ORTHO05D005966 2.6e-23 112.1 85 61.2
MELO3C026636.2 Cucumis melo HOM05D000639 ORTHO05D005966 3.4e-23 111.7 85 65.9
AUR62033456 Chenopodium quinoa HOM05D000639 ORTHO05D005966 4.4e-23 111.3 84 60.7
Lalb_Chr08g0234841 Lupinus albus HOM05D000639 ORTHO05D005966 4.4e-23 111.3 84 63.1
Psat1g026600 Pisum sativum HOM05D000639 ORTHO05D005966 5.8e-23 110.9 84 59.5
COL.COLO4_35182 Corchorus olitorius HOM05D000639 ORTHO05D005966 9.9e-23 110.2 84 58.3
Gohir.D05G020100 Gossypium hirsutum HOM05D000639 ORTHO05D005966 9.9e-23 110.2 85 62.4
MBI01_g07125_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D005966 9.9e-23 110.2 86 57.0
CsaV3_1G029740 Cucumis sativus L. HOM05D000639 ORTHO05D005966 1.3e-22 109.8 85 64.7
Medtr2g054880 Medicago truncatula HOM05D000639 ORTHO05D005966 1.3e-22 109.8 84 59.5
Aqoxy7G02066 Aquilegia oxysepala HOM05D000639 ORTHO05D005966 1.7e-22 109.4 86 59.3
Oeu034106.1 Olea europaea HOM05D000639 ORTHO05D005966 1.7e-22 109.4 86 61.6
ClCG06G010830 Citrullus lanatus HOM05D000639 ORTHO05D005966 3.8e-22 108.2 85 64.7
Sed0022714 Sechium edule HOM05D000639 ORTHO05D005966 4.9e-22 107.8 85 64.7
Solyc08g067050.3 Solanum lycopersicum HOM05D000639 ORTHO05D005966 4.9e-22 107.8 84 58.3
Sopen08g021000 Solanum pennellii HOM05D000639 ORTHO05D005966 4.9e-22 107.8 84 58.3
Cc06_g08920 Coffea canephora HOM05D000639 ORTHO05D005966 6.4e-22 107.5 82 59.8
CANSAT56G2031 Cannabis sativa HOM05D000639 ORTHO05D005966 8.4e-22 107.1 84 58.3
Migut.K00470 Erythranthe guttata HOM05D000639 ORTHO05D005966 8.4e-22 107.1 86 58.1
PSO455G0187 Papaver somniferum HOM05D000639 ORTHO05D005966 8.4e-22 107.1 84 58.3
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.4e-21 106.3 85 56.5
Nitab4.5_0000010g0090 Nicotiana tabacum HOM05D000639 ORTHO05D005966 1.9e-21 105.9 84 58.3
Nitab4.5_0004237g0010 Nicotiana tabacum HOM05D000639 ORTHO05D005966 1.9e-21 105.9 84 58.3
PGSC0003DMG400023146 Solanum tuberosum HOM05D000639 ORTHO05D005966 1.9e-21 105.9 84 57.1
PSO170G4892 Papaver somniferum HOM05D000639 ORTHO05D005966 3.2e-21 105.1 84 56.0
Lalb_Chr23g0275241 Lupinus albus HOM05D000639 ORTHO05D005966 4.2e-21 104.8 84 59.5
TWI32G0239 Tripterygium wilfordii HOM05D000639 ORTHO05D005966 4.2e-21 104.8 84 58.3
CAN.G98.20 Capsicum annuum HOM05D000639 ORTHO05D005966 5.4e-21 104.4 84 57.1
PGR102G0199 Punica granatum HOM05D000639 ORTHO05D005966 5.4e-21 104.4 84 59.5
Ah.14g080820 Amaranthus hybridus HOM05D000639 ORTHO05D005966 7.1e-21 104.0 84 56.0
ECA234G3201 Erigeron canadensis HOM05D000639 ORTHO05D005966 7.1e-21 104.0 84 54.8
Nn2g11937 Nelumbo nucifera HOM05D000639 ORTHO05D005966 7.1e-21 104.0 80 56.2
HanXRQChr12g0356471 Helianthus annuus HOM05D000639 ORTHO05D005966 9.2e-21 103.6 84 54.8
Lsat_1_v5_gn_5_97961 Lactuca sativa HOM05D000639 ORTHO05D005966 9.2e-21 103.6 84 53.6
TAR625G1221 Trochodendron aralioides HOM05D000639 ORTHO05D005966 9.2e-21 103.6 86 57.0
EL10Ac8g18595 Beta vulgaris HOM05D000639 ORTHO05D005966 1.2e-20 103.2 84 58.3
MSTRG.10684 Avicennia marina HOM05D000639 ORTHO05D005966 1.6e-20 102.8 86 57.0
TWI34G1898 Tripterygium wilfordii HOM05D000639 ORTHO05D005966 2.1e-20 102.4 84 56.0
Lj7A634G25 Lonicera japonica HOM05D000639 ORTHO05D005966 2.7e-20 102.1 84 57.1
Thhalv10013798m.g Eutrema salsugineum HOM05D000639 ORTHO05D005966 4.6e-20 101.3 84 58.3
HanXRQChr10g0316771 Helianthus annuus HOM05D000639 ORTHO05D005966 7.8e-20 100.5 84 52.4
HPP92_019957 Vanilla planifolia HOM05D000639 ORTHO05D005966 7.8e-20 100.5 86 53.5
Sed0023961 Sechium edule HOM05D000639 ORTHO05D005966 1.0e-19 100.1 85 60.0
HPP92_019968 Vanilla planifolia HOM05D000639 ORTHO05D005966 1.0e-19 100.1 85 52.9
A02p10350 Brassica napus HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 57.1
C02p17080 Brassica napus HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 57.1
BolC2t07806H Brassica oleracea HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 57.1
BraA02t06101Z Brassica rapa HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 57.1
Carub.0001s0411 Capsella rubella HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 57.1
Sp6g16390 Schrenkiella parvula HOM05D000639 ORTHO05D005966 1.3e-19 99.8 84 56.0
AT1G04870 Arabidopsis thaliana HOM05D000639 ORTHO05D005966 1.7e-19 99.4 84 56.0
CDE06G2279 Ceratophyllum demersum HOM05D000639 ORTHO05D005966 1.7e-19 99.4 82 51.2
SalBow1G6947 Salvia bowleyana HOM05D000639 ORTHO05D005966 1.7e-19 99.4 86 55.8
AL1G14590 Arabidopsis lyrata HOM05D000639 ORTHO05D005966 2.3e-19 99.0 84 56.0
BcaC03g14321 Brassica carinata HOM05D000639 ORTHO05D005966 2.3e-19 99.0 84 57.1
Os06g0142800 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D005966 2.3e-19 99.0 86 50.0
Aa31LG5G9060 Aethionema arabicum HOM05D000639 ORTHO05D005966 6.6e-19 97.4 84 54.8
CDE07G1010 Ceratophyllum demersum HOM05D000639 ORTHO05D005966 6.6e-19 97.4 82 50.0
Zm00001eb270370 Zea mays HOM05D000639 ORTHO05D005966 6.6e-19 97.4 86 50.0
CARHR004260 Cardamine hirsuta HOM05D000639 ORTHO05D005966 8.7e-19 97.1 84 56.0
THA.LOC104809006 Tarenaya hassleriana HOM05D000639 ORTHO05D005966 8.7e-19 97.1 84 57.1
Oeu058053.1 Olea europaea HOM05D000639 ORTHO05D005966 1.1e-18 96.7 86 54.7
SGA_v2.0_scaffold8G04290 Striga asiatica HOM05D000639 ORTHO05D005966 1.1e-18 96.7 94 50.0
C09p44710 Brassica napus HOM05D000639 ORTHO05D005966 1.5e-18 96.3 84 56.0
BcaC04g20343 Brassica carinata HOM05D000639 ORTHO05D005966 2.5e-18 95.5 84 56.0
BolC9t57344H Brassica oleracea HOM05D000639 ORTHO05D005966 2.5e-18 95.5 84 56.0
Lsat_1_v5_gn_8_57261 Lactuca sativa HOM05D000639 ORTHO05D005966 2.8e-17 92.0 80 51.2
BcaB08g35791 Brassica carinata HOM05D000639 ORTHO05D005966 3.6e-17 91.7 81 53.1
Mapoly0090s0014 Marchantia polymorpha HOM05D000639 ORTHO05D005966 1.4e-16 89.7 82 46.3
Pp3c15_2560 Physcomitrium patens HOM05D000639 ORTHO05D005966 5.8e-15 84.3 82 46.3
CBR_g9102 Chara braunii HOM05D000639 ORTHO05D005966 1.3e-14 83.2 86 41.9
Peaxi162Scf00361g00045 Petunia axillaris HOM05D000639 ORTHO05D005966 1.7e-14 82.8 61 60.7
ATR0815G030 Amborella trichopoda HOM05D000639 ORTHO05D005966 2.2e-14 82.4 82 48.8
A10p11640 Brassica napus HOM05D000639 ORTHO05D005966 2.2e-14 82.4 84 51.2
SMO145G0055 Selaginella moellendorffii HOM05D000639 ORTHO05D005966 2.9e-14 82.0 82 43.9
SMO359G0001 Selaginella moellendorffii HOM05D000639 ORTHO05D005966 2.9e-14 82.0 82 43.9
BcaB05g22130 Brassica carinata HOM05D000639 ORTHO05D005966 3.5e-12 75.1 59 55.9
Pp3c9_1560 Physcomitrium patens HOM05D000639 ORTHO05D005966 4.6e-12 74.7 81 42.0
unitig_85.g27252 Utricularia gibba HOM05D001787 ORTHO05D003488 2.3e-11 72.4 60 51.7
MCO01G705 Micromonas commoda HOM05D000639 ORTHO05D005966 8.1e-09 63.9 88 37.5
Actinidia07438 Actinidia chinensis HOM05D000347 ORTHO05D000694 1.4e-08 63.2 43 60.5
Cre12.g558100 Chlamydomonas reinhardtii HOM05D000639 ORTHO05D005966 7.6e-07 57.4 68 39.7
SEGI_06396 Sequoiadendron giganteum HOM05D000639 ORTHO05D005966 1.3e-06 56.6 39 56.4
vmacro06183 Vaccinium macrocarpon HOM05D000639 ORTHO05D005966 4.9e-06 54.7 42 61.9


User provided reference genes

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