Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0089201 Rosa chinensis HOM05D007077 ORTHO05D008853 2.8e-57 224.9 106 100.0
FAN23G2971 Fragaria x ananassa HOM05D007077 ORTHO05D008853 6.5e-54 213.8 106 93.4
FAN26G2340 Fragaria x ananassa HOM05D007077 ORTHO05D008853 6.5e-54 213.8 106 93.4
FvH4_1g03790 Fragaria vesca HOM05D007077 ORTHO05D008853 1.5e-53 212.6 106 92.5
FAN19G1922 Fragaria x ananassa HOM05D007077 ORTHO05D008853 1.5e-53 212.6 106 92.5
MD02G1036500 Malus domestica HOM05D007077 ORTHO05D008853 9.1e-48 193.4 106 80.2
CiPaw.03G240800 Carya illinoinensis HOM05D007077 ORTHO05D008853 1.6e-47 192.6 106 81.1
Duzib150G1251 Durio zibethinus HOM05D007077 ORTHO05D008853 1.3e-46 189.5 106 77.4
Prupe.7G238900 Prunus persica HOM05D007077 ORTHO05D008853 5.0e-46 187.6 106 77.4
Duzib168G0686 Durio zibethinus HOM05D007077 ORTHO05D008853 7.2e-45 183.7 106 74.5
Eucgr.C04175 Eucalyptus grandis HOM05D007077 ORTHO05D008853 9.5e-45 183.3 106 75.5
Thecc.09G122000 Theobroma cacao HOM05D007077 ORTHO05D008853 9.5e-45 183.3 106 72.6
Gohir.A05G018500 Gossypium hirsutum HOM05D007077 ORTHO05D008853 2.8e-44 181.8 106 73.6
Gohir.D05G019400 Gossypium hirsutum HOM05D007077 ORTHO05D008853 8.0e-44 180.3 106 72.6
COL.COLO4_35188 Corchorus olitorius HOM05D007077 ORTHO05D008853 1.0e-43 179.9 106 72.6
Gorai.009G019800 Gossypium raimondii HOM05D007077 ORTHO05D008853 1.0e-43 179.9 106 72.6
QL02p087620 Quercus lobata HOM05D007077 ORTHO05D008853 1.8e-43 179.1 104 74.0
COL.COLO4_05999 Corchorus olitorius HOM05D007077 ORTHO05D008853 3.0e-43 178.3 104 72.1
Potri.003G137900 Populus trichocarpa HOM05D007077 ORTHO05D008853 2.6e-42 175.3 106 69.8
Actinidia07437 Actinidia chinensis HOM05D007077 ORTHO05D008853 7.5e-42 173.7 103 71.8
TWI63G0911 Tripterygium wilfordii HOM05D007077 ORTHO05D008853 1.3e-41 172.9 106 68.9
Atru.chr7.1226 Acer truncatum HOM05D007077 ORTHO05D008853 3.7e-41 171.4 104 71.2
Sabra03G0099300 Salix brachista HOM05D007077 ORTHO05D008853 4.9e-41 171.0 104 69.2
Manes.06G053400 Manihot esculenta HOM05D007077 ORTHO05D008853 8.3e-41 170.2 106 67.9
arahy.Tifrunner.gnm1.ann1.7ZPA8Y Arachis hypogaea HOM05D007077 ORTHO05D008853 1.1e-40 169.9 102 72.5
arahy.Tifrunner.gnm1.ann1.BTXG8Q Arachis hypogaea HOM05D007077 ORTHO05D008853 1.1e-40 169.9 102 72.5
GSVIVG01035379001 Vitis vinifera HOM05D007077 ORTHO05D008853 1.1e-40 169.9 105 66.7
MBI04_g10421_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 1.8e-40 169.1 105 68.6
Psat4g041880 Pisum sativum HOM05D007077 ORTHO05D008853 4.1e-40 167.9 105 68.6
Lj4g0023379 Lotus japonicus HOM05D007077 ORTHO05D008853 5.4e-40 167.5 101 73.3
Lalb_Chr07g0178761 Lupinus albus HOM05D007077 ORTHO05D008853 5.4e-40 167.5 104 71.2
THA.LOC104826537 Tarenaya hassleriana HOM05D007077 ORTHO05D008853 5.4e-40 167.5 104 67.3
BolC6t38404H Brassica oleracea HOM05D007077 ORTHO05D008853 1.2e-39 166.4 101 67.3
VMungo1215G0506 Vigna mungo HOM05D007077 ORTHO05D008853 3.5e-39 164.9 106 68.9
Rhsim03G0246400 Rhododendron simsii HOM05D007077 ORTHO05D008853 4.5e-39 164.5 103 68.9
Thhalv10019349m.g Eutrema salsugineum HOM05D007077 ORTHO05D008853 5.9e-39 164.1 101 69.3
TPR.G10683 Trifolium pratense HOM05D007077 ORTHO05D008853 5.9e-39 164.1 105 68.6
A07p29070 Brassica napus HOM05D007077 ORTHO05D008853 7.8e-39 163.7 102 65.7
Glyma.17G117400 Glycine max HOM05D007077 ORTHO05D008853 7.8e-39 163.7 103 68.9
TAR636G1135 Trochodendron aralioides HOM05D007077 ORTHO05D008853 7.8e-39 163.7 105 62.9
Phvul.003G162000 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 1.0e-38 163.3 106 67.0
CSS0046716 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 1.3e-38 162.9 103 68.0
BcaB02g06994 Brassica carinata HOM05D007077 ORTHO05D008853 1.7e-38 162.5 101 66.3
C06p32830 Brassica napus HOM05D007077 ORTHO05D008853 1.7e-38 162.5 101 66.3
Cpa.g.sc75.76 Carica papaya HOM05D007077 ORTHO05D008853 1.7e-38 162.5 96 71.9
Sed0015086 Sechium edule HOM05D007077 ORTHO05D008853 2.3e-38 162.2 104 66.3
BcaB05g24885 Brassica carinata HOM05D007077 ORTHO05D008853 2.9e-38 161.8 100 67.0
Glyma.05G009400 Glycine max HOM05D007077 ORTHO05D008853 3.8e-38 161.4 103 68.0
Medtr4g113750 Medicago truncatula HOM05D007077 ORTHO05D008853 3.8e-38 161.4 95 72.6
Dinv36561 Davidia involucrata HOM05D007077 ORTHO05D008853 6.6e-38 160.6 103 67.0
vmacro06174 Vaccinium macrocarpon HOM05D007077 ORTHO05D008853 1.1e-37 159.8 102 66.7
Phvul.003G161700 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 1.5e-37 159.5 103 67.0
Sp5g30250 Schrenkiella parvula HOM05D007077 ORTHO05D008853 5.6e-37 157.5 101 64.4
CARHR068440 Cardamine hirsuta HOM05D007077 ORTHO05D008853 7.3e-37 157.1 104 64.4
AL2G35020 Arabidopsis lyrata HOM05D007077 ORTHO05D008853 8.0e-36 153.7 101 62.4
AT1G75125 Arabidopsis thaliana HOM05D007077 ORTHO05D008853 1.0e-35 153.3 101 62.4
CSS0033721 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 1.0e-35 153.3 90 72.2
Carub.0002s2191 Capsella rubella HOM05D007077 ORTHO05D008853 1.0e-35 153.3 101 63.4
Aa31LG4G5320 Aethionema arabicum HOM05D007077 ORTHO05D008853 4.0e-35 151.4 100 63.0
Haze_25634 Corylus avellana HOM05D007077 ORTHO05D008853 4.0e-35 151.4 92 71.7
Actinidia26405 Actinidia chinensis HOM05D007077 ORTHO05D008853 1.2e-34 149.8 84 76.2
BcaB02g07008 Brassica carinata HOM05D007077 ORTHO05D008853 1.5e-34 149.4 102 59.8
PGR102G1835 Punica granatum HOM05D007077 ORTHO05D008853 4.4e-34 147.9 106 61.3
QL02p031889 Quercus lobata HOM05D007077 ORTHO05D008853 4.4e-34 147.9 101 68.3
QL93p2004_0148 Quercus lobata HOM05D007077 ORTHO05D008853 4.4e-34 147.9 101 68.3
CARHR068450 Cardamine hirsuta HOM05D007077 ORTHO05D008853 7.5e-34 147.1 104 60.6
Ciclev10010021m.g Citrus clementina HOM05D007077 ORTHO05D008853 9.8e-34 146.7 91 71.4
CsaV3_2G002680 Cucumis sativus L. HOM05D007077 ORTHO05D008853 9.8e-34 146.7 104 61.5
BraA07t30546Z Brassica rapa HOM05D007077 ORTHO05D008853 2.2e-33 145.6 102 59.8
BcaC03g15541 Brassica carinata HOM05D007077 ORTHO05D008853 3.7e-33 144.8 101 60.4
BolC2t09261H Brassica oleracea HOM05D007077 ORTHO05D008853 3.7e-33 144.8 101 60.4
Os01g0612800 Oryza sativa ssp. japonica HOM05D007077 ORTHO05D008853 8.3e-33 143.7 103 57.3
Pp3c10_2110 Physcomitrium patens HOM05D007077 ORTHO05D008853 8.3e-33 143.7 100 59.0
A02p19700 Brassica napus HOM05D007077 ORTHO05D008853 1.1e-32 143.3 106 58.5
BraA02t07006Z Brassica rapa HOM05D007077 ORTHO05D008853 1.1e-32 143.3 106 58.5
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 3.2e-32 141.7 91 67.0
CDE06G0710 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 7.0e-32 140.6 105 57.1
ClCG11G002840 Citrullus lanatus HOM05D007077 ORTHO05D008853 1.0e-30 136.7 123 53.7
Nitab4.5_0000167g0170 Nicotiana tabacum HOM05D007077 ORTHO05D008853 3.0e-30 135.2 103 58.3
Hma1.2p1_0665F.1_g199210 Hydrangea macrophylla HOM05D007077 ORTHO05D008853 3.9e-30 134.8 63 84.1
Mapoly0015s0040 Marchantia polymorpha HOM05D007077 ORTHO05D008853 1.5e-29 132.9 99 55.6
Ah.05g167190 Amaranthus hybridus HOM05D007077 ORTHO05D008853 1.9e-29 132.5 102 55.9
CDE07G1647 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 7.3e-29 130.6 86 65.1
Sed0025696 Sechium edule HOM05D007077 ORTHO05D008853 2.1e-28 129.0 93 59.1
Hund09149 Selenicereus undatus HOM05D007077 ORTHO05D008853 2.1e-28 129.0 98 54.1
Peaxi162Scf01013g00228 Petunia axillaris HOM05D007077 ORTHO05D008853 4.7e-28 127.9 103 56.3
Manes.14G129700 Manihot esculenta HOM05D007077 ORTHO05D008853 1.5e-26 122.9 92 55.4
EL10Ac8g18603 Beta vulgaris HOM05D007077 ORTHO05D008853 2.6e-26 122.1 88 58.0
CAN.G307.7 Capsicum annuum HOM05D007077 ORTHO05D008853 3.4e-26 121.7 103 51.5
CDE07G0486 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.7e-25 119.4 77 63.6
AagrBONN_evm.TU.Sc2ySwM_368.923 Anthoceros agrestis HOM05D007077 ORTHO05D008853 3.7e-25 118.2 102 46.1
Sopen03g004510 Solanum pennellii HOM05D007077 ORTHO05D008853 4.9e-25 117.9 103 49.5
SMO137G0334 Selaginella moellendorffii HOM05D007077 ORTHO05D008853 1.4e-24 116.3 88 55.7
Solyc03g025690.4 Solanum lycopersicum HOM05D007077 ORTHO05D008853 5.4e-24 114.4 103 48.5
Oeu055966.1 Olea europaea HOM05D007077 ORTHO05D008853 7.0e-24 114.0 86 58.1
Lsat_1_v5_gn_5_98981 Lactuca sativa HOM05D007077 ORTHO05D008853 9.2e-24 113.6 100 51.0
SalBow6G6978 Salvia bowleyana HOM05D007077 ORTHO05D008853 2.0e-23 112.5 102 50.0
Cc09_g03400 Coffea canephora HOM05D007077 ORTHO05D008853 7.8e-23 110.5 63 66.7
MSTRG.10653 Avicennia marina HOM05D007077 ORTHO05D008853 1.0e-22 110.2 100 49.0
HanXRQChr01g0017151 Helianthus annuus HOM05D007077 ORTHO05D008853 2.3e-22 109.0 107 46.7
SGA_v2.0_scaffold51G18726 Striga asiatica HOM05D007077 ORTHO05D008853 2.3e-22 109.0 101 47.5
Migut.K00414 Erythranthe guttata HOM05D007077 ORTHO05D008853 1.1e-21 106.7 100 47.0
GSVIVG01015495001 Vitis vinifera HOM05D007077 ORTHO05D008853 1.1e-21 106.7 52 78.8
MELO3C031577.2 Cucumis melo HOM05D007077 ORTHO05D008853 2.8e-20 102.1 92 51.1
HanXRQChr12g0356451 Helianthus annuus HOM05D007077 ORTHO05D008853 4.7e-20 101.3 111 43.2
Nitab4.5_0001579g0110 Nicotiana tabacum HOM05D007077 ORTHO05D008853 8.1e-20 100.5 108 41.7
PGSC0003DMG400014298 Solanum tuberosum HOM05D007077 ORTHO05D008853 2.6e-18 95.5 91 46.2
C02p32320 Brassica napus HOM05D007077 ORTHO05D008853 6.4e-17 90.9 49 75.5
MCO14G029 Micromonas commoda HOM05D007077 ORTHO05D008853 4.0e-11 71.6 102 34.3
QL03p062338 Quercus lobata HOM05D007077 ORTHO05D008853 9.9e-10 67.0 59 61.0
CBR_g10839 Chara braunii HOM05D001161 ORTHO05D000497 4.9e-09 64.7 101 31.7


User provided reference genes

Program Settings