Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.4e-259 899.0 441 100.0
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.2e-242 842.8 439 93.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.3e-241 838.6 440 93.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 5.0e-241 837.4 440 93.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.2e-240 833.6 440 93.2
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.1e-235 817.8 440 91.8
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.9e-208 729.2 440 83.0
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.5e-205 719.5 444 81.1
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.4e-203 712.2 445 80.9
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 9.2e-203 710.3 436 81.0
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 4.3e-200 701.4 436 80.3
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 4.7e-199 698.0 433 80.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 5.3e-190 667.9 442 76.2
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.9e-188 662.1 402 80.1
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 4.9e-188 661.4 441 75.7
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.2e-187 658.3 430 75.6
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 7.1e-187 657.5 443 75.6
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.7e-186 655.6 446 73.5
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.7e-186 655.6 402 79.9
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.6e-186 654.8 448 73.7
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.3e-185 653.3 449 73.5
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.3e-185 652.5 429 75.8
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.3e-185 652.5 438 73.7
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.0e-185 652.1 448 73.4
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 3.3e-184 648.7 435 74.7
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 7.4e-184 647.5 435 73.6
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 2.8e-183 645.6 429 73.7
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.8e-183 644.8 441 73.9
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.8e-182 642.9 405 76.5
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 9.0e-182 640.6 441 70.1
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.4e-181 638.6 399 76.7
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 4.5e-181 638.3 416 74.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 7.6e-181 637.5 421 73.2
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 9.9e-181 637.1 402 77.1
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.8e-180 635.2 415 75.2
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.5e-179 632.5 450 72.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.2e-179 632.1 444 72.3
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 5.5e-179 631.3 431 72.4
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 7.1e-179 630.9 431 72.2
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.6e-178 629.8 403 75.2
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.0e-178 627.9 388 78.1
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.0e-177 627.1 435 71.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.3e-177 626.7 431 72.2
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.3e-177 626.7 412 72.8
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.9e-177 625.2 427 71.7
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.1e-177 624.8 388 77.8
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 5.1e-177 624.8 429 74.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 8.7e-177 624.0 416 73.8
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 4.3e-176 621.7 392 76.5
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 9.6e-176 620.5 418 73.0
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.6e-175 619.8 427 72.6
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.1e-175 619.4 432 72.2
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.1e-175 619.4 403 74.2
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.4e-174 616.7 448 69.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-174 616.3 485 69.1
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.8e-174 616.3 423 73.8
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.1e-174 615.5 393 76.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.4e-173 612.1 433 70.2
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 4.5e-173 611.7 404 73.8
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 5.8e-173 611.3 396 74.5
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.3e-172 610.1 393 77.9
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.2e-172 609.4 440 69.8
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 8.4e-172 607.4 453 69.5
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-171 607.1 386 75.4
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 1.1e-171 607.1 386 75.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.1e-171 607.1 384 76.6
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.4e-171 606.7 406 74.4
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.9e-171 606.3 407 74.9
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 3.2e-171 605.5 386 74.9
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 4.2e-171 605.1 437 70.0
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 9.3e-171 604.0 418 71.5
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 6.0e-170 601.3 422 71.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 1.3e-169 600.1 438 68.9
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.8e-169 599.7 418 71.1
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.3e-169 599.4 400 73.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 3.9e-169 598.6 399 72.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 6.7e-169 597.8 418 71.1
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 6.7e-169 597.8 418 71.1
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 7.4e-168 594.3 383 74.2
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.3e-167 593.6 443 69.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.6e-167 593.2 386 74.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.7e-167 592.0 448 68.8
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 1.1e-166 590.5 424 70.5
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.1e-166 590.5 389 74.0
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.4e-166 590.1 433 69.7
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 3.1e-166 589.0 393 73.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 9.0e-166 587.4 425 70.1
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.0e-165 586.3 405 73.3
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.6e-165 585.9 413 71.9
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.6e-165 585.9 393 71.5
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.9e-165 584.7 395 71.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.3e-164 583.6 405 72.8
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.9e-163 579.7 428 69.9
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 1.9e-163 579.7 438 69.9
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 5.5e-163 578.2 442 68.3
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 9.4e-163 577.4 412 70.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 9.4e-163 577.4 427 69.8
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.6e-162 575.5 391 72.4
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 7.9e-162 574.3 393 71.8
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.5e-160 570.1 410 70.0
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.7e-159 565.5 402 68.9
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.1e-158 562.4 409 68.2
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.7e-156 556.6 419 68.3
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 5.0e-156 555.1 390 69.5
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.1e-155 553.9 430 64.4
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.1e-154 549.7 390 70.3
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 3.6e-154 548.9 438 62.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 3.6e-154 548.9 384 69.5
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 3.6e-154 548.9 409 66.5
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.0e-153 545.8 424 66.5
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.0e-152 543.1 451 61.2
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 3.7e-151 538.9 390 67.2
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 8.2e-151 537.7 390 67.4
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 5.9e-149 531.6 387 66.7
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 5.0e-148 528.5 394 67.8
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.9e-147 526.6 423 63.4
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 3.2e-147 525.8 302 82.1
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 4.2e-147 525.4 390 67.2
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.6e-146 523.5 389 66.6
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.0e-145 520.8 431 61.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 5.2e-145 518.5 399 64.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.7e-144 515.0 259 95.4
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.7e-143 513.5 356 70.8
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.7e-143 513.5 399 64.9
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 2.8e-143 512.7 336 75.9
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.8e-142 510.0 389 66.3
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.7e-138 496.1 409 62.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 5.2e-137 491.9 390 62.6
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 7.7e-125 451.4 385 60.3
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 1.3e-119 434.1 281 76.5
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.2e-110 402.9 282 69.9
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.0e-110 401.7 245 76.7
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.2e-110 401.4 242 77.3
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 8.0e-106 388.3 281 66.9
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 3.0e-100 369.8 413 48.9
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.7e-93 346.7 274 59.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 9.6e-91 338.2 234 71.8
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 5.2e-89 332.4 256 63.3
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 8.9e-89 331.6 394 46.2
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.6e-88 330.1 429 44.8
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.4e-79 298.9 174 83.3
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.7e-76 290.8 193 75.6
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 4.8e-66 256.1 202 60.9
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.2e-66 255.8 296 45.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.1e-65 255.0 173 70.5
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 4.6e-61 239.6 244 55.3
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.0e-55 219.5 201 58.7
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.4e-48 196.8 198 56.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.8e-44 184.5 146 63.0
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.3e-43 180.3 233 41.6
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 3.7e-42 176.8 110 76.4
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.4e-38 164.9 243 43.6
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.2e-38 163.7 82 92.7
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 9.1e-33 145.6 156 49.4
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-30 137.9 289 33.2
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 4.2e-30 136.7 300 32.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 6.1e-29 132.9 312 30.4
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.1e-27 128.6 79 75.9
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.6e-24 118.2 344 27.6
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.5e-24 117.1 64 81.2
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.0e-23 115.5 64 79.7
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-23 114.8 64 79.7
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 6.5e-23 112.8 244 35.7
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.0e-19 101.3 125 45.6
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.2e-18 97.8 146 40.4
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.8e-18 97.4 141 37.6
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 9.1e-17 92.4 89 52.8
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.6e-13 80.5 94 47.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 7.5e-11 72.8 67 47.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.7e-10 70.5 186 32.3
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-09 68.9 38 78.9
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 1.5e-06 58.5 51 52.9


User provided reference genes

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