Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-70 269.2 133 100.0
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 5.3e-37 157.9 133 65.4
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.5e-31 139.8 131 58.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.5e-31 139.8 131 58.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.5e-31 139.8 131 58.8
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-31 138.7 131 58.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-31 138.7 131 58.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.7e-31 137.1 131 58.0
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.4e-29 133.3 131 55.7
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-29 133.3 131 55.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.4e-29 133.3 131 55.7
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.8e-29 132.9 131 55.7
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.1e-29 132.1 131 55.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.1e-29 132.1 131 55.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 3.1e-29 132.1 131 55.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 4.1e-29 131.7 131 55.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 7.0e-29 131.0 131 55.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 7.0e-29 131.0 131 55.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 7.0e-29 131.0 131 55.0
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 9.1e-29 130.6 131 54.2
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 9.1e-29 130.6 131 54.2
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.2e-28 130.2 131 54.2
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.2e-28 130.2 131 55.0
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.2e-28 130.2 131 54.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.6e-28 129.8 131 53.4
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 2.0e-28 129.4 131 53.4
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 2.7e-28 129.0 131 53.4
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.5e-28 128.6 131 55.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 4.5e-28 128.3 131 52.7
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.5e-28 128.3 126 55.6
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 5.9e-28 127.9 131 53.4
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.0e-27 127.1 131 53.4
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 51.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 51.9
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 52.7
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 53.4
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 51.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.7e-27 126.3 131 52.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.2e-27 125.9 131 51.9
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.2e-27 125.9 131 51.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 2.2e-27 125.9 131 52.7
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.9e-27 125.6 131 51.9
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.8e-27 125.2 131 52.7
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 5.0e-27 124.8 126 53.2
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.0e-27 124.8 131 52.7
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.0e-27 124.8 131 51.9
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.0e-27 124.8 131 51.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.0e-27 124.8 131 51.9
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 52.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 51.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 51.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 51.1
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 51.1
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 51.1
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 6.5e-27 124.4 131 53.4
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.5e-27 124.0 131 51.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 8.5e-27 124.0 131 51.9
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.1e-26 123.6 126 53.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.1e-26 123.6 131 51.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.1e-26 123.6 131 51.1
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.5e-26 123.2 131 50.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.5e-26 123.2 131 50.4
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.5e-26 123.2 131 51.9
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.5e-26 123.2 131 51.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.5e-26 123.2 131 51.9
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.9e-26 122.9 131 51.1
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.9e-26 122.9 131 50.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.9e-26 122.9 131 52.7
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.2e-26 122.1 131 50.4
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 4.2e-26 121.7 131 51.9
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.2e-26 121.7 131 51.9
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.2e-26 121.7 131 51.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.2e-26 121.7 131 50.4
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-26 121.7 123 55.3
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 5.5e-26 121.3 131 50.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 7.2e-26 120.9 131 50.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.6e-25 118.6 131 49.6
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.6e-25 118.6 123 53.7
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.0e-24 117.1 131 48.9
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.4e-24 116.7 131 50.4
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.4e-24 116.7 131 48.9
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.4e-24 116.7 131 48.9
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.0e-24 115.5 131 49.6
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 4.0e-24 115.2 131 48.1
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 4.0e-24 115.2 120 52.5
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 8.8e-24 114.0 131 48.1
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.0e-23 112.8 131 47.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.6e-23 112.5 131 47.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.4e-23 112.1 131 46.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 4.4e-23 111.7 131 48.9
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.7e-23 111.3 131 47.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.5e-23 110.9 132 47.0
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-22 110.2 131 47.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.3e-22 110.2 131 47.3
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.7e-22 109.8 131 45.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.8e-22 109.0 131 46.6
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.8e-22 109.0 131 46.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 7.0e-21 104.4 131 46.6
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.1e-21 104.0 131 43.5
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.0e-20 102.8 124 46.0
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.7e-20 102.4 132 46.2
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.7e-20 102.4 131 45.0
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 7.7e-20 100.9 131 44.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 7.7e-20 100.9 131 44.3
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 6.6e-19 97.8 132 43.9
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.9e-18 96.3 131 42.0
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 7.2e-18 94.4 124 45.2
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.0e-15 86.3 48 83.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.9e-12 74.7 37 89.2
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.9e-12 74.7 38 89.5
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.3e-11 73.6 43 76.7
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-11 73.2 48 68.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.3e-11 72.8 42 76.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.9e-11 72.4 41 80.5
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.9e-11 72.4 41 82.9
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.5e-10 69.3 43 72.1
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.0e-08 63.9 127 33.1
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.8e-08 61.2 33 81.8
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.3e-06 57.0 114 32.5


User provided reference genes

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