Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-23 111.3 53 100.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 6.7e-15 83.2 42 92.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-13 78.6 37 100.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.8e-13 77.0 37 97.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 6.2e-13 76.6 37 97.3
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.2e-13 76.6 37 97.3
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 6.2e-13 76.6 37 97.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.8e-12 75.1 37 94.6
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 5.3e-12 73.6 37 91.9
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 5.3e-12 73.6 37 91.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 5.3e-12 73.6 37 91.9
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 6.9e-12 73.2 37 89.2
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 6.9e-12 73.2 37 91.9
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 6.9e-12 73.2 37 91.9
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 6.9e-12 73.2 37 89.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 9.0e-12 72.8 37 91.9
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 9.0e-12 72.8 37 89.2
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 9.0e-12 72.8 37 89.2
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 86.5
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.0e-11 71.6 37 89.2
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 86.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 89.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 89.2
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 89.2
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-11 71.2 45 82.2
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 86.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 86.5
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 89.2
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.6e-11 71.2 37 83.8
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.4e-11 70.9 37 86.5
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.4e-11 70.9 37 86.5
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 3.4e-11 70.9 37 89.2
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.4e-11 70.9 37 89.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.5e-11 70.5 36 88.9
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 5.8e-11 70.1 37 86.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.6e-11 69.7 37 86.5
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 7.6e-11 69.7 37 86.5
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 7.6e-11 69.7 37 86.5
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 7.6e-11 69.7 37 86.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 7.6e-11 69.7 37 86.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 89.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 89.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 9.9e-11 69.3 37 83.8
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.3e-10 68.9 37 81.1
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.3e-10 68.9 37 86.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-10 68.6 37 86.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.2e-10 68.2 37 86.5
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.2e-10 68.2 37 86.5
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.2e-10 68.2 37 83.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.9e-10 67.8 37 83.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.8e-10 67.4 37 81.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.9e-10 67.0 37 83.8
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 4.9e-10 67.0 37 83.8
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.9e-10 67.0 37 83.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 78.4
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 78.4
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 81.1
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 78.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 83.8
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 6.4e-10 66.6 37 83.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 8.4e-10 66.2 37 78.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 8.4e-10 66.2 37 78.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.4e-10 66.2 37 78.4
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 8.4e-10 66.2 37 78.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-09 65.9 37 81.1
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-09 65.9 37 81.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.1e-09 65.9 37 81.1
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.1e-09 65.9 37 81.1
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.4e-09 65.5 37 83.8
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.9e-09 65.1 37 81.1
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.9e-09 65.1 37 81.1
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.9e-09 65.1 37 81.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.4e-09 64.7 37 81.1
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.4e-09 64.7 37 81.1
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.2e-09 64.3 37 78.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 5.5e-09 63.5 37 81.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.2e-08 62.4 37 78.4
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.2e-08 62.4 36 80.6
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.2e-08 62.4 37 81.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.6e-08 62.0 37 75.7
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.7e-08 61.2 36 72.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.6e-08 60.5 37 75.7
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.6e-08 60.5 34 82.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.0e-07 59.3 37 75.7
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.0e-07 59.3 37 75.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.3e-07 58.9 37 73.0
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.3e-07 58.2 37 73.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.1e-06 55.8 37 67.6
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.1e-06 55.8 29 89.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.9e-06 55.1 37 67.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.9e-06 55.1 33 75.8


User provided reference genes

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