Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-95 352.1 175 100.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-69 265.0 136 97.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-63 245.0 172 78.5
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 7.0e-61 237.7 172 76.2
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-59 231.1 180 74.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.1e-57 226.1 169 74.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.6e-55 219.2 168 72.6
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.4e-55 218.8 164 73.8
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.7e-55 218.0 164 73.8
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 8.8e-48 194.1 159 65.4
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-46 189.9 166 63.3
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.6e-44 183.3 168 57.7
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.2e-41 173.7 168 56.0
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.4e-40 170.2 162 59.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 8.9e-40 167.5 162 53.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.2e-39 167.2 162 56.2
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.6e-39 166.0 157 58.6
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.6e-39 166.0 157 58.6
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 3.4e-39 165.6 157 57.3
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 4.4e-39 165.2 155 58.1
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.4e-39 165.2 156 56.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 7.5e-39 164.5 162 54.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.7e-38 162.2 158 57.6
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 4.9e-38 161.8 157 58.0
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.1e-37 160.6 158 57.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.4e-37 160.2 152 57.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.4e-37 159.5 161 55.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.2e-37 159.1 154 57.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.1e-37 158.7 157 56.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.4e-37 158.3 153 57.5
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 7.0e-37 157.9 166 51.8
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.6e-36 156.8 155 58.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.6e-36 156.8 160 53.8
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.6e-36 156.8 166 51.2
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.6e-36 155.2 155 56.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 5.9e-36 154.8 155 56.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 5.9e-36 154.8 157 55.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.8e-36 154.5 155 54.8
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.0e-35 154.1 156 55.8
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.3e-35 153.7 155 54.2
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-35 153.3 159 57.2
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.9e-35 152.5 154 55.2
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.0e-35 151.8 157 52.2
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 6.6e-35 151.4 156 53.8
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 6.6e-35 151.4 154 54.5
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.5e-34 149.4 157 54.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.5e-34 149.4 154 55.2
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.3e-34 149.1 156 51.9
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 5.6e-34 148.3 154 53.2
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.3e-34 147.9 151 55.0
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 7.3e-34 147.9 152 54.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 9.5e-34 147.5 156 53.2
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 9.5e-34 147.5 157 52.2
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.1e-33 146.4 151 53.6
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.7e-33 145.2 151 53.6
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 4.7e-33 145.2 151 53.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.2e-33 144.8 155 52.9
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.0e-32 144.1 151 53.0
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.3e-32 142.9 153 54.9
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 6.8e-32 141.4 86 86.0
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 8.9e-32 141.0 152 52.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 8.9e-32 141.0 156 50.0
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 8.9e-32 141.0 156 50.0
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 8.9e-32 141.0 156 50.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 8.9e-32 141.0 147 52.4
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.2e-31 140.6 156 50.0
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.2e-31 140.6 156 50.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.2e-31 140.6 152 53.3
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.5e-31 140.2 156 49.4
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-31 139.8 153 52.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-31 139.8 153 52.3
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.0e-31 139.8 149 54.4
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.4e-31 139.0 151 51.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 4.4e-31 138.7 154 50.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.3e-30 137.1 161 51.6
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 1.7e-30 136.7 160 48.8
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.7e-30 136.7 204 43.6
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.2e-30 136.3 160 50.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.7e-30 135.6 152 50.0
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.7e-30 135.6 152 50.0
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 8.3e-30 134.4 152 49.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.2e-29 132.5 161 46.6
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 4.1e-29 132.1 162 49.4
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 9.2e-29 131.0 82 85.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.5e-28 129.0 155 48.4
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 7.8e-28 127.9 71 85.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 7.8e-28 127.9 156 46.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.0e-27 127.5 149 52.3
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.3e-27 126.3 162 49.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 6.6e-27 124.8 154 45.5
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.5e-26 122.9 156 47.4
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.3e-26 122.5 156 47.4
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.3e-26 122.1 160 46.9
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.6e-25 120.2 154 46.1
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.1e-25 119.8 159 47.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.7e-25 118.6 156 46.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.3e-24 116.3 163 42.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.2e-23 114.0 158 46.2
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.3e-22 110.5 151 44.4
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.9e-22 108.6 155 44.5
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 8.3e-22 107.8 152 42.8
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-21 106.7 62 87.1
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 7.1e-21 104.8 152 43.4
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-20 103.2 62 87.1
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 7.8e-20 101.3 87 55.2
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.3e-19 100.5 155 38.7
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.6e-18 95.1 112 49.1
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.3e-18 94.7 182 36.8
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.3e-18 94.7 182 36.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.6e-17 93.6 160 36.9
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 6.8e-16 88.2 89 55.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.4e-15 85.9 157 36.3
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.8e-15 85.1 158 36.1
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.1e-13 79.0 151 37.1
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 5.4e-13 78.6 157 31.8
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.5e-12 75.9 144 34.7
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 6.0e-12 75.1 64 57.8
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.7e-11 73.6 145 35.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.1e-10 70.9 153 32.7
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.2e-09 67.4 153 33.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 2.8e-09 66.2 64 54.7
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.1e-08 64.3 148 32.4
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.9e-06 56.2 70 47.1
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 4.9e-06 55.5 70 45.7


User provided reference genes

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