Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088891 Rosa chinensis HOM05D006732 ORTHO05D005682 1.3e-271 939.1 452 100.0
FvH4_1g04650 Fragaria vesca HOM05D006732 ORTHO05D005682 9.0e-137 491.1 392 63.5
RcHm_v2.0_Chr2g0090631 Rosa chinensis HOM05D006732 ORTHO05D005682 5.5e-134 481.9 458 57.2
FAN19G1839 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-130 470.7 385 61.6
RcHm_v2.0_Chr7g0225411 Rosa chinensis HOM05D006732 ORTHO05D005682 2.2e-130 469.9 459 57.5
FvH4_5g09240 Fragaria vesca HOM05D006732 ORTHO05D005682 4.8e-130 468.8 455 56.3
FAN08G0591 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.3e-130 468.4 393 61.1
FAN18G2797 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.1e-129 466.1 403 59.6
RcHm_v2.0_Chr2g0090681 Rosa chinensis HOM05D006732 ORTHO05D005682 2.6e-128 463.0 380 61.6
FAN19G0447 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-124 450.7 460 53.0
FAN23G1448 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-124 450.3 382 61.8
FvH4_1g04981 Fragaria vesca HOM05D006732 ORTHO05D005682 3.3e-123 446.0 459 52.7
FAN23G1322 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.3e-123 446.0 396 57.3
FAN23G0913 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.4e-123 444.9 451 53.4
FvH4_1g07310 Fragaria vesca HOM05D006732 ORTHO05D005682 6.3e-122 441.8 376 58.8
FAN19G2793 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-121 440.3 458 52.6
FvH4_1g04892 Fragaria vesca HOM05D006732 ORTHO05D005682 2.4e-121 439.9 459 52.5
FAN19G1623 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.9e-120 435.3 401 58.4
FvH4_1g04870 Fragaria vesca HOM05D006732 ORTHO05D005682 1.3e-119 434.1 386 56.5
FAN26G1852 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.8e-119 432.6 455 53.2
FvH4_1g07350 Fragaria vesca HOM05D006732 ORTHO05D005682 3.2e-118 429.5 370 58.4
FAN26G0144 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.0e-116 422.9 453 52.5
FvH4_1g04982 Fragaria vesca HOM05D006732 ORTHO05D005682 2.6e-115 419.9 460 51.7
FAN26G0545 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.4e-115 419.1 451 52.5
FAN26G0599 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.1e-113 411.4 454 52.0
FAN13G2469 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.5e-111 404.8 367 57.2
FAN03G1911 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-106 389.8 422 50.2
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-106 389.8 490 47.8
FAN23G2814 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-106 389.8 490 47.8
FvH4_1g05020 Fragaria vesca HOM05D006732 ORTHO05D005682 1.8e-100 370.5 343 56.6
FAN19G1442 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-98 363.2 422 46.7
FAN19G0608 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-97 360.9 337 56.1
FAN23G0775 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.4e-97 359.0 359 50.7
FvH4_1g04980 Fragaria vesca HOM05D006732 ORTHO05D005682 5.2e-92 342.4 412 49.0
FAN19G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.7e-91 339.0 412 48.5
FAN23G0359 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-89 334.0 412 47.8
FAN26G2548 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.8e-87 326.2 333 53.5
RcHm_v2.0_Chr4g0406891 Rosa chinensis HOM05D006732 ORTHO05D005682 1.2e-85 321.2 407 47.4
FAN28G0011 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.8e-83 311.6 421 42.8
FvH4_5g09163 Fragaria vesca HOM05D006732 ORTHO05D005682 8.9e-76 288.5 220 64.5
FAN26G1230 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.5e-75 285.4 352 43.5
FAN19G1106 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.2e-73 278.5 417 41.5
FvH4_1g03120 Fragaria vesca HOM05D006732 ORTHO05D005682 3.5e-72 276.6 382 43.5
FvH4_1g03650 Fragaria vesca HOM05D006732 ORTHO05D005682 3.9e-71 273.1 427 40.3
FvH4_1g03870 Fragaria vesca HOM05D006732 ORTHO05D005682 6.8e-68 262.3 288 49.7
FAN06G2841 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.4e-65 252.7 387 43.2
FvH4_7g04610 Fragaria vesca HOM05D006732 ORTHO05D005682 6.0e-64 249.2 387 42.9
FAN03G3183 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.0e-64 249.2 376 44.1
FAN06G4694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.6e-63 245.4 421 41.1
FAN01G2330 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.7e-61 239.6 386 42.7
FvH4_1g03800 Fragaria vesca HOM05D006732 ORTHO05D005682 1.8e-60 237.7 421 39.0
FAN28G2932 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.4e-58 229.2 220 58.6
FvH4_1g04850 Fragaria vesca HOM05D006732 ORTHO05D005682 1.2e-48 198.4 191 52.4
RcHm_v2.0_Chr2g0090141 Rosa chinensis HOM05D006732 ORTHO05D005682 3.5e-48 196.8 166 59.0
FAN26G1044 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.0e-48 196.1 347 38.9
FAN19G1133 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.9e-47 193.4 405 35.6
FAN26G2691 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.6e-47 192.6 171 55.0
FAN10G1871 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-45 188.3 285 44.9
FAN14G2290 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-45 188.0 344 38.4
FvH4_1g03730 Fragaria vesca HOM05D006732 ORTHO05D005682 7.6e-43 179.1 270 40.0
FAN19G2470 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.6e-43 179.1 381 35.4
FAN26G0550 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.9e-43 178.7 163 53.4
FAN26G3406 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.8e-42 176.8 207 45.9
RcHm_v2.0_Chr2g0089871 Rosa chinensis HOM05D006732 ORTHO05D005682 4.9e-42 176.4 142 59.2
FAN19G1213 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-42 175.6 389 33.4
FAN23G0993 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-42 175.6 166 53.0
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.0e-39 168.7 364 36.5
FvH4_6g38540 Fragaria vesca HOM05D006732 ORTHO05D005682 2.0e-35 154.5 401 32.4
FvH4_3g44180 Fragaria vesca HOM05D031336 ORTHO05D029596 1.9e-33 147.9 444 28.8
FAN11G3653 Fragaria x ananassa HOM05D031336 ORTHO05D029596 1.9e-33 147.9 444 28.8
FAN08G2174 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-30 138.3 101 62.4
FAN28G1694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.3e-30 137.1 169 47.3
FAN19G0291 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.2e-29 132.5 195 45.1
FvH4_1g07301 Fragaria vesca HOM05D006732 ORTHO05D005682 5.3e-28 129.8 99 58.6
Prupe.7G110000 Prunus persica HOM05D006732 ORTHO05D005682 1.7e-26 124.8 303 33.7
MD02G1004600 Malus domestica HOM05D006732 ORTHO05D005682 8.4e-26 122.5 365 31.2
FAN19G1560 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-25 122.1 173 48.0
FAN23G1684 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.2e-25 120.6 185 38.4
FvH4_6g52510 Fragaria vesca HOM05D013417 ORTHO05D022618 5.5e-25 119.8 329 31.0
FAN19G1906 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.3e-25 119.0 146 45.9
RcHm_v2.0_Chr5g0043771 Rosa chinensis HOM05D018501 ORTHO05D020617 9.3e-25 119.0 333 31.5
RcHm_v2.0_Chr1g0337091 Rosa chinensis HOM05D010677 ORTHO05D012678 6.1e-24 116.3 412 26.0
FAN06G4869 Fragaria x ananassa HOM05D018501 ORTHO05D020617 1.3e-23 115.2 336 29.5
RcHm_v2.0_Chr1g0380941 Rosa chinensis HOM05D006732 ORTHO05D005682 1.1e-22 112.1 420 28.1
FvH4_7g04500 Fragaria vesca HOM05D018501 ORTHO05D020617 4.3e-22 110.2 363 29.8
FAN10G1111 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.3e-22 110.2 306 27.5
FAN19G3146 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.3e-22 110.2 198 37.4
RcHm_v2.0_Chr1g0379941 Rosa chinensis HOM05D008398 ORTHO05D005682 9.7e-22 109.0 446 26.7
FvH4_7g31320 Fragaria vesca HOM05D010677 ORTHO05D012678 1.3e-21 108.6 325 26.8
FAN06G1563 Fragaria x ananassa HOM05D018501 ORTHO05D020617 1.3e-21 108.6 344 28.5
FAN23G1145 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-21 108.6 73 71.2
RcHm_v2.0_Chr1g0379901 Rosa chinensis HOM05D008398 ORTHO05D005682 1.3e-21 108.6 446 26.9
RcHm_v2.0_Chr1g0329851 Rosa chinensis HOM05D006732 ORTHO05D005682 2.2e-21 107.8 261 36.0
FAN23G1741 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.8e-21 107.5 186 36.0
FAN03G2148 Fragaria x ananassa HOM05D018501 ORTHO05D020617 4.8e-21 106.7 342 28.9
RcHm_v2.0_Chr5g0043731 Rosa chinensis HOM05D018501 ORTHO05D020617 6.3e-21 106.3 425 27.5
FvH4_7g27001 Fragaria vesca HOM05D010677 ORTHO05D012678 1.8e-20 104.8 419 26.3
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.8e-20 104.8 430 26.0
FvH4_3g43023 Fragaria vesca HOM05D015758 ORTHO05D022659 2.4e-20 104.4 426 26.3
FvH4_7g31670 Fragaria vesca HOM05D010677 ORTHO05D012678 2.4e-20 104.4 291 30.9
FAN03G1932 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.4e-20 104.4 329 29.8
FAN10G3231 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.3e-20 103.2 260 28.8
FAN15G3012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 5.3e-20 103.2 296 30.1
FAN26G3385 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.3e-20 103.2 139 45.3
FAN03G3389 Fragaria x ananassa HOM05D010677 ORTHO05D012678 6.9e-20 102.8 278 28.8
FAN14G4282 Fragaria x ananassa HOM05D013417 ORTHO05D022618 6.9e-20 102.8 329 29.2
FvH4_1g03530 Fragaria vesca HOM05D006732 ORTHO05D005682 1.5e-19 101.7 194 39.7
FvH4_2g38420 Fragaria vesca HOM05D013417 ORTHO05D022618 1.5e-19 101.7 330 30.6
FAN04G2845 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.5e-19 101.7 417 26.4
RcHm_v2.0_Chr1g0376501 Rosa chinensis HOM05D008398 ORTHO05D005682 2.6e-19 100.9 285 29.8
FvH4_7g31260 Fragaria vesca HOM05D010677 ORTHO05D012678 3.4e-19 100.5 215 32.1
FvH4_5g09162 Fragaria vesca HOM05D006732 ORTHO05D005682 1.0e-18 99.0 167 41.9
FAN06G1115 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.7e-18 98.2 215 31.2
FAN06G1601 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.7e-18 98.2 215 31.2
FAN19G1354 Fragaria x ananassa HOM05D006732 ORTHO05D035266 1.7e-18 98.2 202 39.1
FAN19G2055 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.7e-18 98.2 75 62.7
FAN23G2570 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.7e-18 98.2 67 62.7
Prupe.6G029800 Prunus persica HOM05D006732 ORTHO05D005682 1.7e-18 98.2 202 32.7
FvH4_4g12220 Fragaria vesca HOM05D013417 ORTHO05D022618 2.2e-18 97.8 315 30.2
FAN12G2017 Fragaria x ananassa HOM05D013417 ORTHO05D022618 6.5e-18 96.3 314 29.9
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-18 96.3 249 32.5
FAN23G1506 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.5e-18 96.3 67 61.2
FvH4_7g31682 Fragaria vesca HOM05D010677 ORTHO05D012678 1.1e-17 95.5 289 29.1
FvH4_6g50450 Fragaria vesca HOM05D008398 ORTHO05D005682 1.4e-17 95.1 351 29.3
FAN05G0770 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.4e-17 95.1 363 29.5
Prupe.2G176100 Prunus persica HOM05D006732 ORTHO05D005682 1.4e-17 95.1 207 34.3
FvH4_6g28610 Fragaria vesca HOM05D008398 ORTHO05D005682 1.9e-17 94.7 252 32.1
FAN28G1562 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.9e-17 94.7 68 58.8
RcHm_v2.0_Chr1g0337131 Rosa chinensis HOM05D006732 ORTHO05D012678 1.6e-16 91.7 201 34.8
FvH4_7g30461 Fragaria vesca HOM05D008398 ORTHO05D035411 4.6e-16 90.1 336 27.1
FAN01G2543 Fragaria x ananassa HOM05D008398 ORTHO05D046348 6.1e-16 89.7 301 28.9
FAN14G4819 Fragaria x ananassa HOM05D008398 ORTHO05D005682 6.1e-16 89.7 360 27.2
RcHm_v2.0_Chr2g0090221 Rosa chinensis HOM05D006732 ORTHO05D005682 6.1e-16 89.7 193 33.2
FAN12G2010 Fragaria x ananassa HOM05D013417 ORTHO05D022618 7.9e-16 89.4 310 30.6
FAN18G2036 Fragaria x ananassa HOM05D013417 ORTHO05D005682 1.0e-15 89.0 272 30.5
FAN28G2349 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.0e-15 89.0 117 44.4
FAN28G2648 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.0e-15 89.0 117 44.4
FvH4_1g04991 Fragaria vesca HOM05D006732 ORTHO05D005682 1.4e-15 88.6 178 41.0
FAN06G3627 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.4e-15 88.6 306 28.4
FAN12G0204 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-15 88.2 104 46.2
FvH4_7g30470 Fragaria vesca HOM05D008398 ORTHO05D046348 3.9e-15 87.0 306 28.1
FAN06G0523 Fragaria x ananassa HOM05D008398 ORTHO05D005682 6.7e-15 86.3 254 29.9
FAN10G0863 Fragaria x ananassa HOM05D008398 ORTHO05D005682 8.8e-15 85.9 251 29.5
QL02p081954 Quercus lobata HOM05D006732 ORTHO05D005682 8.8e-15 85.9 357 24.6
RcHm_v2.0_Chr1g0323581 Rosa chinensis HOM05D012901 ORTHO05D022659 3.3e-14 84.0 233 29.2
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.7e-14 83.2 267 28.5
FAN03G0822 Fragaria x ananassa HOM05D010677 ORTHO05D012678 9.7e-14 82.4 163 33.1
FAN06G3455 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.3e-13 82.0 364 27.2
FAN06G5012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 3.7e-13 80.5 371 26.1
FAN23G1373 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.3e-13 79.7 94 41.5
QL02p078454 Quercus lobata HOM05D006732 ORTHO05D005682 1.1e-12 79.0 150 36.7
FAN09G2688 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.4e-12 78.6 233 30.0
FvH4_4g06202 Fragaria vesca HOM05D006732 ORTHO05D005682 6.9e-12 76.3 57 52.6
FvH4_7g31310 Fragaria vesca HOM05D000122 ORTHO05D012678 2.0e-11 74.7 122 35.2
FAN01G1167 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.0e-11 74.7 150 30.0
FAN12G2497 Fragaria x ananassa HOM05D013417 ORTHO05D005682 3.8e-10 70.5 174 32.8
FvH4_1g03720 Fragaria vesca HOM05D006732 ORTHO05D035266 6.5e-10 69.7 140 37.9
FAN12G0321 Fragaria x ananassa HOM05D013417 ORTHO05D005682 6.5e-10 69.7 174 32.8
FvH4_1g04520 Fragaria vesca HOM05D006732 ORTHO05D005682 1.1e-09 68.9 82 41.5
FAN19G0514 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-09 68.6 98 41.8
FAN19G2109 Fragaria x ananassa HOM05D009798 ORTHO05D001056 1.9e-09 68.2 63 55.6
FAN03G0547 Fragaria x ananassa HOM05D012901 ORTHO05D016303 2.5e-09 67.8 253 27.3
Lju1319C1T3 Lonicera japonica HOM05D028833 ORTHO05D012833 2.5e-09 67.8 162 30.9
FAN10G3802 Fragaria x ananassa HOM05D008398 ORTHO05D035411 7.2e-09 66.2 163 28.8
FAN22G0443 Fragaria x ananassa HOM05D013417 ORTHO05D005682 7.2e-09 66.2 227 27.3
FvH4_4g06201 Fragaria vesca HOM05D006732 ORTHO05D005682 9.4e-09 65.9 108 40.7
FAN05G1573 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.6e-08 65.1 159 31.4
FvH4_1g04910 Fragaria vesca HOM05D006732 ORTHO05D046085 4.7e-08 63.5 54 51.9
COL.COLO4_29430 Corchorus olitorius HOM05D035412 ORTHO05D019051 7.9e-08 62.8 277 24.5
FAN19G2861 Fragaria x ananassa HOM05D006732 ORTHO05D046085 7.9e-08 62.8 51 54.9
FAN01G0388 Fragaria x ananassa HOM05D008398 ORTHO05D035411 3.0e-07 60.8 155 29.0
FAN25G1334 Fragaria x ananassa HOM05D031336 ORTHO05D029596 3.0e-07 60.8 136 34.6
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 6.7e-07 59.7 167 27.5
FAN06G3593 Fragaria x ananassa HOM05D000122 ORTHO05D012678 8.8e-07 59.3 122 31.1
FAN06G4197 Fragaria x ananassa HOM05D000122 ORTHO05D012678 8.8e-07 59.3 122 31.1
Lju1319C0T4 Lonicera japonica HOM05D028833 ORTHO05D012833 1.1e-06 58.9 164 27.4
RcHm_v2.0_Chr5g0014821 Rosa chinensis HOM05D006732 ORTHO05D005682 1.1e-06 58.9 167 29.3
Rhsim04G0245000 Rhododendron simsii HOM05D019272 ORTHO05D020252 1.5e-06 58.5 169 29.0
Lj5E258T0 Lonicera japonica HOM05D012292 ORTHO05D012234 2.6e-06 57.8 116 28.4
FAN23G0757 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.4e-06 56.2 95 42.1


User provided reference genes

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