Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088851 Rosa chinensis HOM05D003720 ORTHO05D345140 1.3e-20 102.1 48 100.0
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 1.6e-07 58.5 32 87.5
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 2.1e-07 58.2 32 84.4
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 3.5e-07 57.4 32 84.4
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 4.6e-07 57.0 32 84.4
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 6.0e-07 56.6 32 84.4
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 6.0e-07 56.6 32 84.4
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 6.0e-07 56.6 32 84.4
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 7.9e-07 56.2 32 84.4
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 7.9e-07 56.2 32 84.4
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 7.9e-07 56.2 32 81.2
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 7.9e-07 56.2 32 84.4
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 7.9e-07 56.2 32 84.4
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 84.4
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 84.4
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 84.4
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 84.4
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 84.4
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 81.2
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 81.2
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 81.2
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 1.3e-06 55.5 32 78.1
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 1.8e-06 55.1 32 81.2
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 3.9e-06 53.9 32 81.2
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 3.9e-06 53.9 33 84.8
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 3.9e-06 53.9 32 81.2


User provided reference genes

Program Settings