Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088821 Rosa chinensis HOM05D001327 ORTHO05D005399 5.0e-42 174.1 92 100.0
RcHm_v2.0_Chr2g0088751 Rosa chinensis HOM05D001327 ORTHO05D005399 1.0e-10 70.1 35 100.0
FAN26G1748 Fragaria x ananassa HOM05D001327 ORTHO05D005399 2.9e-10 68.6 39 89.7
RcHm_v2.0_Chr2g0089031 Rosa chinensis HOM05D001327 ORTHO05D005399 2.9e-10 68.6 35 97.1
FvH4_1g03540 Fragaria vesca HOM05D001327 ORTHO05D005399 3.8e-10 68.2 35 97.1
RcHm_v2.0_Chr2g0088981 Rosa chinensis HOM05D001327 ORTHO05D005399 8.6e-10 67.0 35 94.3
FAN28G2560 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.1e-09 66.6 35 94.3
Atru.chr7.1215 Acer truncatum HOM05D001327 ORTHO05D005399 1.9e-09 65.9 34 94.1
FAN19G1565 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.9e-09 65.9 35 94.3
Prupe.7G240800 Prunus persica HOM05D001327 ORTHO05D005399 2.5e-09 65.5 34 91.2
Ah.09g226330 Amaranthus hybridus HOM05D001327 ORTHO05D005399 3.3e-09 65.1 35 91.4
Ciclev10008632m.g Citrus clementina HOM05D001327 ORTHO05D005399 4.3e-09 64.7 34 94.1
Duzib150G0117 Durio zibethinus HOM05D001327 ORTHO05D005399 4.3e-09 64.7 35 91.4
Eucgr.C01140 Eucalyptus grandis HOM05D001327 ORTHO05D005399 4.3e-09 64.7 34 94.1
Gorai.004G277600 Gossypium raimondii HOM05D001327 ORTHO05D005399 4.3e-09 64.7 35 91.4
AUR62011113 Chenopodium quinoa HOM05D001327 ORTHO05D005399 7.3e-09 63.9 35 88.6
Actinidia26397 Actinidia chinensis HOM05D001327 ORTHO05D005399 9.5e-09 63.5 34 91.2
Hund09138 Selenicereus undatus HOM05D001327 ORTHO05D005399 9.5e-09 63.5 35 85.7
Duzib168G1530 Durio zibethinus HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
Gohir.A07G035300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
Gohir.D07G039300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
Gorai.001G041400 Gossypium raimondii HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
MD02G1034500 Malus domestica HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
MD15G1175300 Malus domestica HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
Manes.06G049400 Manihot esculenta HOM05D001327 ORTHO05D005399 1.2e-08 63.2 34 91.2
Cpa.g.sc75.48 Carica papaya HOM05D001327 ORTHO05D005399 1.6e-08 62.8 34 91.2
DCAR_014874 Daucus carota HOM05D001327 ORTHO05D005399 1.6e-08 62.8 35 88.6
Rhsim01G0074600 Rhododendron simsii HOM05D001327 ORTHO05D005399 1.6e-08 62.8 35 88.6
COL.COLO4_05782 Corchorus olitorius HOM05D001327 ORTHO05D005399 2.1e-08 62.4 34 88.2
PGR142G2283 Punica granatum HOM05D001327 ORTHO05D005399 2.1e-08 62.4 34 91.2
THA.LOC104815261 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 2.1e-08 62.4 34 91.2
Actinidia40460 Actinidia chinensis HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 88.2
CSS0003288 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 88.2
Dinv41523 Davidia involucrata HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 88.2
Gohir.A06G057000 Gossypium hirsutum HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 91.2
Gohir.D06G055300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 91.2
Gorai.010G064600 Gossypium raimondii HOM05D001327 ORTHO05D005399 2.8e-08 62.0 34 91.2
CSS0028454 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 3.6e-08 61.6 34 88.2
CANSAT11G1188 Cannabis sativa HOM05D001327 ORTHO05D005399 3.6e-08 61.6 34 91.2
Gohir.A08G239100 Gossypium hirsutum HOM05D001327 ORTHO05D005399 3.6e-08 61.6 35 88.6
QL02p087951 Quercus lobata HOM05D001327 ORTHO05D005399 3.6e-08 61.6 33 93.9
AT2G26830 Arabidopsis thaliana HOM05D001327 ORTHO05D005399 4.7e-08 61.2 35 88.6
Carub.0004s0730 Capsella rubella HOM05D001327 ORTHO05D005399 4.7e-08 61.2 35 88.6
Nn2g12004 Nelumbo nucifera HOM05D001327 ORTHO05D005399 4.7e-08 61.2 34 88.2
Potri.006G120700 Populus trichocarpa HOM05D001327 ORTHO05D005399 4.7e-08 61.2 34 88.2
Sabra06G0094900 Salix brachista HOM05D001327 ORTHO05D005399 4.7e-08 61.2 34 88.2
MSTRG.19605 Avicennia marina HOM05D001327 ORTHO05D005399 6.1e-08 60.8 34 88.2
MBI04_g07642_MAGBIO Magnolia biondii HOM05D001327 ORTHO05D005399 6.1e-08 60.8 35 85.7
SGA_v2.0_scaffold229G43327 Striga asiatica HOM05D001327 ORTHO05D005399 6.1e-08 60.8 34 88.2
EL10Ac8g18630 Beta vulgaris HOM05D001327 ORTHO05D005399 8.0e-08 60.5 35 85.7
A07p17790 Brassica napus HOM05D001327 ORTHO05D005399 8.0e-08 60.5 34 88.2
BraA07t29498Z Brassica rapa HOM05D001327 ORTHO05D005399 8.0e-08 60.5 34 88.2
CiPaw.03G242900 Carya illinoinensis HOM05D001327 ORTHO05D005399 8.0e-08 60.5 32 93.8
Rhsim03G0247500 Rhododendron simsii HOM05D001327 ORTHO05D005399 8.0e-08 60.5 34 88.2
vmacro06123 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 8.0e-08 60.5 34 88.2
ECA236G0859 Erigeron canadensis HOM05D001327 ORTHO05D005399 1.4e-07 59.7 35 85.7
FAN23G0800 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.4e-07 59.7 34 85.3
Lsat_1_v5_gn_8_59061 Lactuca sativa HOM05D001327 ORTHO05D005399 1.4e-07 59.7 35 85.7
Nitab4.5_0002551g0010 Nicotiana tabacum HOM05D001327 ORTHO05D005399 1.4e-07 59.7 34 85.3
Nitab4.5_0010615g0020 Nicotiana tabacum HOM05D001327 ORTHO05D005399 1.4e-07 59.7 34 85.3
Sc08g0006700 Simmondsia chinensis HOM05D001327 ORTHO05D005399 1.4e-07 59.7 34 85.3
TAR090G0001 Trochodendron aralioides HOM05D001327 ORTHO05D005399 1.4e-07 59.7 34 85.3
CAN.G1757.2 Capsicum annuum HOM05D001327 ORTHO05D005399 1.8e-07 59.3 35 82.9
Thhalv10002015m.g Eutrema salsugineum HOM05D001327 ORTHO05D005399 1.8e-07 59.3 34 88.2
Lalb_Chr08g0234481 Lupinus albus HOM05D001327 ORTHO05D005399 1.8e-07 59.3 34 79.4
Solyc08g066820.3 Solanum lycopersicum HOM05D001327 ORTHO05D005399 1.8e-07 59.3 34 85.3
Sopen08g020780 Solanum pennellii HOM05D001327 ORTHO05D005399 1.8e-07 59.3 34 85.3
PGSC0003DMG401009603 Solanum tuberosum HOM05D001327 ORTHO05D005399 1.8e-07 59.3 34 85.3
GSVIVG01015513001 Vitis vinifera HOM05D001327 ORTHO05D005399 1.8e-07 59.3 51 68.6
Cfa003355 Carpinus fangiana HOM05D001327 ORTHO05D005399 2.3e-07 58.9 33 87.9
ClCG08G003060 Citrullus lanatus HOM05D001327 ORTHO05D005399 2.3e-07 58.9 36 83.3
Haze_25606 Corylus avellana HOM05D001327 ORTHO05D005399 2.3e-07 58.9 33 87.9
TWI32G0662 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 2.3e-07 58.9 34 88.2
TWI34G1767 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 2.3e-07 58.9 34 88.2
HanXRQChr05g0140591 Helianthus annuus HOM05D001327 ORTHO05D005399 3.0e-07 58.5 35 82.9
PSO170G6854 Papaver somniferum HOM05D001327 ORTHO05D005399 3.0e-07 58.5 35 80.0
PSO455G0151 Papaver somniferum HOM05D001327 ORTHO05D005399 3.0e-07 58.5 35 80.0
AL4G20030 Arabidopsis lyrata HOM05D001327 ORTHO05D005399 4.0e-07 58.2 35 85.7
BcaC02g10832 Brassica carinata HOM05D001327 ORTHO05D005399 4.0e-07 58.2 34 85.3
C04p24660 Brassica napus HOM05D001327 ORTHO05D005399 4.0e-07 58.2 34 85.3
BolC4t23972H Brassica oleracea HOM05D001327 ORTHO05D005399 4.0e-07 58.2 34 85.3
CARHR119010 Cardamine hirsuta HOM05D001327 ORTHO05D005399 4.0e-07 58.2 35 85.7
TAR626G1113 Trochodendron aralioides HOM05D001327 ORTHO05D005399 4.0e-07 58.2 34 85.3
Aa31LG5G9080 Aethionema arabicum HOM05D001327 ORTHO05D005399 5.2e-07 57.8 32 90.6
Dinv36539 Davidia involucrata HOM05D001327 ORTHO05D005399 5.2e-07 57.8 32 90.6
Lj7A630G51 Lonicera japonica HOM05D001327 ORTHO05D005399 5.2e-07 57.8 35 82.9
ATR1156G060 Amborella trichopoda HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
CSS0001967 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
CSS0040252 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
MELO3C024971.2 Cucumis melo HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
CsaV3_6G002870 Cucumis sativus L. HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
Peaxi162Scf00641g00009 Petunia axillaris HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 82.4
Sed0000453 Sechium edule HOM05D001327 ORTHO05D005399 6.8e-07 57.4 34 85.3
Thecc.09G124100 Theobroma cacao HOM05D001327 ORTHO05D005399 6.8e-07 57.4 32 90.6
Nn8g39414 Nelumbo nucifera HOM05D001327 ORTHO05D005399 8.9e-07 57.0 34 85.3
Migut.J01173 Erythranthe guttata HOM05D001327 ORTHO05D005399 1.2e-06 56.6 34 82.4
Sp4g08910 Schrenkiella parvula HOM05D001327 ORTHO05D005399 1.2e-06 56.6 34 85.3
THA.LOC104808999 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 1.2e-06 56.6 34 85.3
Cc06_g08690 Coffea canephora HOM05D001327 ORTHO05D005399 1.5e-06 56.2 34 79.4
Lalb_Chr11g0072051 Lupinus albus HOM05D001327 ORTHO05D005399 1.5e-06 56.2 34 76.5
unitig_46.g18722 Utricularia gibba HOM05D001327 ORTHO05D005399 1.5e-06 56.2 35 80.0
vmacro20541 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 1.5e-06 56.2 35 80.0
Ca_03162_v3 Cicer arietinum L. HOM05D001327 ORTHO05D005399 2.0e-06 55.8 34 76.5
Aqoxy7G03725 Aquilegia oxysepala HOM05D001327 ORTHO05D005399 2.6e-06 55.5 35 77.1
AUR62033491 Chenopodium quinoa HOM05D001327 ORTHO05D005399 2.6e-06 55.5 31 87.1
CDE07G0693 Ceratophyllum demersum HOM05D001327 ORTHO05D005399 3.4e-06 55.1 34 79.4
Medtr2g054370 Medicago truncatula HOM05D001327 ORTHO05D005399 3.4e-06 55.1 34 73.5
TPR.G31097 Trifolium pratense HOM05D001327 ORTHO05D005399 3.4e-06 55.1 34 73.5
TPR.G33130 Trifolium pratense HOM05D001327 ORTHO05D005399 3.4e-06 55.1 34 73.5
Glyma.04G148300 Glycine max HOM05D001327 ORTHO05D005399 5.7e-06 54.3 34 73.5
Pp3c24_1830 Physcomitrium patens HOM05D001327 ORTHO05D005399 5.7e-06 54.3 35 74.3
Glyma.06G216800 Glycine max HOM05D001327 ORTHO05D005399 7.5e-06 53.9 34 73.5


User provided reference genes

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