Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-162 573.5 287 100.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-157 559.3 287 97.6
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.5e-150 535.0 284 94.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.5e-149 530.8 279 95.0
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.2e-148 528.5 279 94.6
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.1e-147 524.2 279 93.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-134 482.3 258 95.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.0e-133 480.3 279 85.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 7.3e-124 447.6 277 80.5
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 4.7e-123 444.9 286 77.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.7e-120 435.3 286 76.2
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.4e-119 433.3 254 83.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.1e-118 429.5 278 75.5
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.5e-118 428.7 261 80.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.0e-117 427.2 278 75.5
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.3e-116 422.2 261 79.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 5.6e-116 421.4 261 78.9
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.8e-115 419.1 280 74.3
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.6e-115 418.7 278 75.2
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 6.2e-115 417.9 258 78.7
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 8.1e-115 417.5 277 76.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.2e-114 414.8 272 75.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.2e-113 413.7 274 75.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.6e-113 412.5 239 84.9
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 4.4e-113 411.8 269 75.1
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 7.5e-113 411.0 252 81.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.3e-112 410.2 254 78.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.3e-112 410.2 272 75.7
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 6.4e-112 407.9 254 78.3
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.1e-111 407.1 252 80.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.1e-111 407.1 248 80.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.6e-110 403.3 245 81.2
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.7e-110 402.5 261 74.7
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.7e-110 402.5 250 78.4
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.0e-109 400.6 255 75.3
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.3e-109 400.2 286 70.3
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.7e-109 399.8 255 75.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.7e-109 399.8 248 78.6
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 2.3e-109 399.4 302 68.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 3.9e-109 398.7 255 75.7
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.9e-109 398.7 249 78.3
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.1e-109 398.3 251 78.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 8.6e-109 397.5 251 76.9
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.1e-108 397.1 251 77.3
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.5e-108 396.7 251 76.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.3e-108 395.6 278 71.6
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.3e-108 395.2 253 76.7
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 7.3e-108 394.4 251 76.1
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 4.7e-107 391.7 255 73.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 6.2e-107 391.3 255 74.1
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 8.1e-107 391.0 269 72.5
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 8.1e-107 391.0 255 74.1
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 8.1e-107 391.0 255 74.1
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.1e-106 390.6 254 76.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.1e-106 389.0 253 74.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.1e-106 389.0 253 74.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 8.9e-106 387.5 257 73.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.5e-105 386.7 242 78.5
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.5e-105 386.7 251 74.5
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.6e-105 386.0 254 74.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.4e-105 385.6 256 74.2
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.8e-105 384.8 253 74.7
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.9e-103 379.8 245 75.9
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 5.4e-103 378.3 251 74.1
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 4.6e-102 375.2 277 70.8
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 6.0e-102 374.8 247 73.7
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.8e-102 374.4 250 74.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.8e-102 374.4 250 74.0
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.3e-101 373.6 255 73.7
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.3e-101 373.6 249 73.5
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.7e-101 373.2 245 73.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 3.9e-101 372.1 250 73.2
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.9e-101 372.1 256 73.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.1e-100 370.5 292 67.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 4.3e-100 368.6 262 71.0
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.3e-100 367.9 253 72.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.1e-98 362.5 249 71.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 4.0e-98 362.1 254 70.5
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.0e-98 360.9 251 71.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.4e-97 359.0 261 67.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.4e-97 359.0 268 67.9
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 5.8e-97 358.2 267 68.9
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.4e-96 354.8 251 70.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.9e-95 353.2 249 71.5
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 5.4e-95 351.7 256 68.8
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.5e-94 349.0 238 72.3
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.3e-93 347.1 205 83.4
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.9e-88 329.3 249 66.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 7.1e-87 324.7 272 63.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.6e-86 323.6 274 60.9
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.0e-86 321.6 206 75.2
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.4e-82 309.7 193 77.2
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 5.8e-81 305.1 169 84.0
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.4e-79 300.4 272 57.4
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.1e-78 296.6 272 59.6
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.7e-78 296.2 281 58.7
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.5e-78 295.8 299 56.2
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 3.0e-77 292.7 251 62.2
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.0e-77 292.7 238 65.1
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.1e-76 290.8 275 55.3
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.3e-74 282.0 271 57.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 2.2e-72 276.6 253 58.5
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 3.8e-72 275.8 258 54.7
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 6.0e-70 268.5 265 55.1
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 8.7e-69 264.6 252 55.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.5e-65 252.3 166 75.9
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.0e-64 251.1 273 51.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.2e-64 250.0 244 56.1
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.5e-63 245.4 336 48.2
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-60 237.7 172 76.2
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.4e-60 235.0 156 74.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.5e-57 225.7 172 69.2
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.6e-54 217.2 291 46.0
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 6.1e-54 215.3 255 46.7
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-51 206.5 111 94.6
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.7e-51 206.1 240 49.2
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.2e-48 196.8 212 50.5
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.4e-44 181.8 128 72.7
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.1e-42 177.9 238 42.9
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.1e-38 162.2 110 72.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 8.0e-38 161.8 88 87.5
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-31 139.4 86 84.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.2e-31 138.7 76 88.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-31 138.3 131 58.0
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.8e-29 134.0 81 87.7
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 5.2e-21 105.9 62 85.5
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 7.5e-20 102.1 62 85.5
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.7e-19 99.8 87 54.0
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 5.0e-16 89.4 186 32.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-15 87.4 48 85.4
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.8e-13 79.0 38 89.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-12 77.0 37 97.3
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-12 77.0 37 97.3
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.3e-11 74.7 64 57.8
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.4e-10 70.5 42 83.3


User provided reference genes

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