Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 5.8e-186 654.1 326 100.0
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.8e-161 571.6 328 89.6
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.2e-160 568.2 328 89.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.5e-160 567.8 328 89.0
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 7.2e-160 567.4 328 89.0
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.3e-158 562.4 328 88.7
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.6e-138 495.7 326 76.7
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 9.4e-136 487.3 326 76.1
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.2e-127 460.3 327 73.4
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.7e-127 459.1 334 71.3
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 4.0e-126 455.3 331 70.7
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.6e-125 452.6 331 71.6
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.2e-124 449.5 329 71.7
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 8.3e-124 447.6 331 70.1
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.1e-123 447.2 330 70.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.4e-123 446.0 328 69.8
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 2.4e-123 446.0 329 70.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.4e-123 444.9 329 71.1
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 7.0e-123 444.5 330 71.2
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.2e-122 443.7 329 70.5
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.0e-122 443.0 329 70.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 4.5e-122 441.8 330 69.4
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.0e-121 440.7 333 69.4
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.9e-121 439.1 328 71.0
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 3.8e-121 438.7 326 70.6
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 3.8e-121 438.7 328 68.6
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 3.8e-121 438.7 327 70.3
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 5.0e-121 438.3 329 69.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 6.5e-121 438.0 329 69.6
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 8.6e-121 437.6 329 69.9
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 8.6e-121 437.6 329 70.8
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 8.6e-121 437.6 328 69.2
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 1.1e-120 437.2 332 68.7
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.1e-120 437.2 329 69.3
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.1e-120 437.2 329 69.6
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.5e-120 436.8 329 69.9
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.5e-120 436.0 328 70.4
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 3.2e-120 435.6 327 69.4
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 3.2e-120 435.6 329 70.5
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 3.2e-120 435.6 329 69.6
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 3.2e-120 435.6 357 66.4
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.2e-120 435.6 327 70.9
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 5.5e-120 434.9 328 70.1
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 9.5e-120 434.1 332 68.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 9.5e-120 434.1 326 69.9
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.6e-119 433.3 329 68.7
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.8e-119 432.6 335 67.5
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 2.8e-119 432.6 331 68.9
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 3.6e-119 432.2 329 68.4
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 3.6e-119 432.2 329 68.4
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 3.6e-119 432.2 329 68.4
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 4.7e-119 431.8 286 74.5
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 4.7e-119 431.8 329 67.8
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 6.1e-119 431.4 332 68.4
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 6.1e-119 431.4 327 69.4
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 8.0e-119 431.0 331 68.6
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.4e-118 430.3 327 68.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.0e-118 428.7 329 67.8
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 5.2e-118 428.3 329 67.2
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 6.8e-118 427.9 330 67.3
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 6.8e-118 427.9 330 67.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 8.8e-118 427.6 327 67.6
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-117 427.2 357 65.8
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-117 426.8 336 67.3
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.0e-117 426.4 327 68.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.0e-117 426.4 327 67.3
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.6e-117 426.0 331 68.6
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.6e-117 426.0 323 69.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 2.6e-117 426.0 328 67.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.7e-117 424.9 329 67.2
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 5.7e-117 424.9 323 69.0
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.5e-117 424.5 330 68.2
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 7.5e-117 424.5 363 63.1
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.7e-116 423.3 325 65.8
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.2e-116 422.9 327 67.0
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 2.2e-116 422.9 329 66.6
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.7e-116 422.2 330 66.7
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 3.7e-116 422.2 330 67.9
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.9e-116 421.8 324 67.3
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 6.3e-116 421.4 329 68.1
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.4e-115 420.2 330 67.0
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.8e-115 419.9 324 67.3
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 4.1e-115 418.7 328 66.2
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.2e-114 417.2 330 66.1
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.6e-114 416.8 265 78.1
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.6e-114 416.8 330 65.8
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 2.7e-114 416.0 323 67.2
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 2.3e-113 412.9 326 65.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 2.9e-113 412.5 326 65.0
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 6.6e-113 411.4 328 66.5
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 6.6e-113 411.4 326 67.2
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.5e-112 410.2 327 65.4
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 1.2e-111 407.1 326 66.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.6e-111 406.8 329 64.7
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.8e-110 403.3 329 65.7
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.0e-110 402.1 324 65.4
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 5.2e-110 401.7 330 65.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.2e-109 400.6 325 64.0
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.5e-109 400.2 324 65.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 4.4e-109 398.7 265 74.7
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.8e-107 393.3 323 65.3
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.6e-106 390.2 265 70.9
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 6.0e-106 388.3 282 68.8
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 2.3e-105 386.3 507 46.7
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 8.3e-100 367.9 328 59.8
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.4e-99 367.1 293 66.2
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 5.0e-97 358.6 392 52.6
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 9.2e-83 311.2 269 57.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 7.8e-82 308.1 187 81.8
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.3e-81 307.4 200 78.0
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 4.3e-80 302.4 183 83.1
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 1.6e-79 300.4 267 55.4
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 2.6e-77 293.1 170 85.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 7.6e-77 291.6 175 81.1
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.4e-75 286.6 176 81.2
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 6.2e-71 271.9 167 79.6
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.3e-64 249.6 209 66.0
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.2e-50 204.5 151 70.2
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 9.7e-48 194.9 191 56.0
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.6e-47 194.1 132 73.5
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.1e-46 189.5 120 75.8
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.9e-46 188.7 121 76.9
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 6.9e-46 188.7 164 56.1
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.5e-45 187.6 218 50.5
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.9e-42 175.3 115 73.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.0e-36 158.3 121 69.4
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 7.9e-34 148.7 156 59.0
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.8e-33 145.2 95 76.8
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.3e-20 104.8 69 73.9
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 8.2e-15 85.5 126 42.9
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 2.7e-13 80.5 164 34.8
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.5e-11 74.7 55 65.5
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.3e-09 67.4 182 31.9
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 2.3e-09 67.4 137 34.3
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 6.8e-09 65.9 178 30.3
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 7.5e-08 62.4 148 32.4
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 3.7e-07 60.1 145 32.4
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.1e-06 58.5 140 35.0


User provided reference genes

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