Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 2602.8 1360 100.0
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 2412.1 1361 92.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 2407.1 1361 92.1
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 2381.7 1394 89.5
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 2334.7 1361 89.3
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 2278.8 1362 86.3
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 2264.6 1394 85.7
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 2244.2 1366 84.9
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 2180.6 1364 83.4
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 2069.7 1365 78.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 2058.9 1372 76.7
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 2052.7 1365 77.3
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 2021.5 1364 76.5
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 2005.7 1367 75.3
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1998.0 1181 88.5
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1986.1 1364 75.1
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1981.8 1366 74.5
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1979.9 1583 67.2
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1979.1 1375 75.2
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1976.1 1364 75.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1967.2 1365 74.3
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1964.5 1352 76.5
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1957.6 1370 73.4
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1947.6 1364 73.6
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1944.9 1374 72.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1931.0 1369 74.1
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1922.5 1361 72.6
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1913.7 1364 73.5
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1912.9 1393 72.2
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1912.1 1379 72.7
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1907.9 1372 72.7
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1905.6 1373 72.7
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1901.7 1365 71.6
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1899.4 1374 71.8
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1899.0 1365 71.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1899.0 1365 71.5
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1895.9 1361 72.7
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1891.3 1345 72.5
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1865.1 1365 71.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1860.9 1363 71.9
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1859.3 1440 69.2
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1857.0 1353 71.5
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1845.5 1369 71.3
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1840.9 1360 72.0
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1837.4 1379 70.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1836.2 1351 70.5
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1832.4 1358 69.7
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1831.6 1367 69.9
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1830.1 1367 70.0
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1819.3 1376 69.3
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1818.9 1324 71.1
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1815.0 1363 69.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1810.0 1363 69.0
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1806.6 1365 68.3
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1805.8 1353 69.9
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1805.8 1362 68.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1804.6 1362 70.6
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1801.2 1362 69.2
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1800.4 1277 73.4
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1800.0 1360 67.9
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1798.9 1349 68.9
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1791.2 1361 67.7
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1790.4 1349 70.6
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1787.3 1358 70.3
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1783.1 1355 68.9
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1779.6 1382 66.7
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1778.1 1383 69.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1772.7 1347 70.5
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1769.6 1378 67.1
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1768.1 1361 68.2
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1762.7 1370 67.7
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1761.5 1372 67.8
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1742.6 1352 67.7
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1740.7 1365 68.0
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1737.6 1363 67.2
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1708.7 1421 63.5
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1708.3 1373 65.9
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1707.6 1362 65.8
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1707.6 1358 66.6
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1703.7 1351 66.0
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1697.6 1284 68.5
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1684.5 1275 68.1
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1665.6 1368 64.1
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1665.2 1380 65.5
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1645.2 1405 63.3
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1627.1 1245 68.2
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1616.3 1369 62.0
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1605.1 1354 62.7
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1586.2 1348 62.3
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1583.2 1348 62.2
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1571.2 1349 61.5
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1530.8 1046 77.2
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1525.4 1367 60.5
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1519.6 1353 60.1
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1508.0 1121 69.5
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1500.7 1356 60.4
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1487.6 1341 59.5
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1487.6 1341 59.5
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1486.9 1006 76.7
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1480.3 1346 59.0
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1474.5 1341 59.4
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1471.4 1342 59.2
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1470.3 1342 59.2
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1468.8 1346 59.1
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1452.6 1361 58.8
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1432.2 1023 74.7
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 0.0e+00 1421.0 1472 56.2
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1420.6 936 79.1
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 0.0e+00 1300.4 935 71.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1287.7 1006 69.5
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1286.9 859 77.9
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1286.6 1008 70.6
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1281.2 857 76.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1255.7 1411 52.7
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1243.8 838 76.6
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1235.7 1276 53.8
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1130.2 1382 48.3
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 0.0e+00 1115.5 905 64.4
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1109.4 1381 47.1
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 1.0e-308 1063.9 1404 46.4
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 3.1e-289 999.2 628 79.8
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.4e-288 995.3 759 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 4.9e-263 912.1 1072 51.2
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 1.3e-260 904.0 1086 49.4
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.9e-259 900.2 614 73.8
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 4.3e-251 872.5 682 68.8
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.8e-242 843.2 899 56.7
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 2.9e-239 833.2 1550 37.1
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.5e-222 775.8 770 58.2
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.2e-194 684.1 418 84.2
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 7.3e-182 642.5 569 61.3
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 8.1e-181 639.0 570 63.9
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 7.6e-179 632.5 424 76.7
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 2.9e-178 630.6 510 62.4
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.7e-170 604.7 420 75.0
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 5.4e-161 573.2 363 78.2
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.8e-125 454.5 498 49.2
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.1e-124 452.6 351 64.4
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.4e-119 435.6 416 57.9
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 1.7e-117 428.7 351 61.0
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.9e-113 415.2 342 59.6
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 5.5e-113 413.7 358 60.9
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.4e-108 399.1 343 60.9
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.7e-101 374.4 261 76.6
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.2e-94 352.8 222 83.3
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.4e-94 351.3 427 45.7
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 3.7e-85 321.2 242 65.3
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 5.2e-71 274.2 329 44.4
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 4.1e-68 264.6 203 71.9
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 2.7e-67 261.9 340 43.2
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.2e-64 253.1 289 52.2
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 9.2e-60 236.9 212 63.2
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 1.6e-48 199.5 131 71.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 9.6e-41 173.7 115 80.0
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 4.8e-40 171.4 232 46.6
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 2.4e-36 159.1 118 69.5
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 9.3e-36 157.1 217 47.5
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 1.8e-34 152.9 136 57.4
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 3.8e-29 135.2 135 54.8
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.6e-24 119.8 86 66.3
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 1.0e-21 110.5 130 48.5
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 5.5e-20 104.8 61 78.7
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 9.4e-20 104.0 76 68.4
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 2.1e-19 102.8 61 77.0
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 2.1e-19 102.8 61 77.0
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 6.1e-19 101.3 92 58.7
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.9e-19 100.9 87 62.1
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 1.0e-18 100.5 61 75.4
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 8.8e-18 97.4 58 75.9
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 3.3e-17 95.5 66 75.8
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 8.2e-16 90.9 72 62.5
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 3.6e-11 75.5 256 29.7
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.6e-09 69.3 123 37.4
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 3.7e-08 65.5 32 96.9
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 3.1e-07 62.4 48 64.6
TPR.G35747 Trifolium pratense HOM05D004002 ORTHO05D004668 7.0e-07 61.2 90 41.1


User provided reference genes

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