Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 2227.6 1138 100.0
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 1873.6 1145 84.6
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1869.0 1145 84.5
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1860.1 1145 84.5
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1842.8 1145 83.7
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1513.8 1144 68.5
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 0.0e+00 1471.8 1144 67.0
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1238.4 1146 58.2
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1215.3 1146 56.6
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 0.0e+00 1199.1 1132 56.9
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1195.6 1210 54.6
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1166.0 1140 60.9
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1151.0 1129 54.7
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1122.8 1121 54.5
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1117.8 1127 53.5
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 0.0e+00 1090.9 1153 52.9
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 5.0e-309 1064.7 1119 52.3
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 6.1e-307 1057.7 1142 51.0
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 1.4e-306 1056.6 1149 52.1
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 8.2e-304 1047.3 1142 50.3
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 1.3e-301 1040.0 1140 50.1
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 1.2e-299 1033.5 1141 49.8
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 8.0e-299 1030.8 1150 49.9
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 3.4e-297 1025.4 1158 49.3
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 7.5e-297 1024.2 1139 50.0
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 4.8e-296 1021.5 1141 50.3
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 1.5e-289 1000.0 1180 48.6
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 3.4e-289 998.8 1144 49.0
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 4.9e-288 995.0 1145 48.6
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 2.0e-281 973.0 1125 49.2
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 2.6e-281 972.6 982 53.4
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 5.6e-276 954.9 1156 47.6
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 6.1e-275 951.4 1147 48.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 6.4e-272 941.4 1230 45.8
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 7.0e-271 937.9 1012 50.9
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 1.5e-268 930.2 1143 45.7
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 4.9e-264 915.2 1122 46.7
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 2.8e-251 872.8 1144 44.9
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.7e-251 872.1 869 54.2
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 2.0e-249 866.7 1099 46.4
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 2.0e-249 866.7 1121 45.5
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 2.4e-247 859.8 1130 45.3
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 1.3e-245 854.0 1130 44.8
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 1.5e-241 840.5 1122 44.0
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 1.7e-240 837.0 1141 44.7
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 2.2e-240 836.6 1132 43.7
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 4.2e-239 832.4 1121 43.4
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 1.2e-238 830.9 1121 43.8
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 5.3e-234 815.5 1154 43.2
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 7.1e-231 805.1 1139 44.5
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 2.1e-230 803.5 1177 41.7
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 2.1e-230 803.5 1014 44.9
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 1.9e-228 797.0 813 52.9
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 3.1e-226 789.6 1114 42.5
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 6.5e-224 781.9 1118 42.7
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 1.5e-217 760.8 947 45.5
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 7.6e-217 758.4 1124 41.9
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 1.6e-214 750.7 1126 40.4
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 3.0e-213 746.5 948 45.9
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 2.0e-209 733.8 1121 40.0
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 1.9e-207 727.2 1094 42.5
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.2e-201 708.0 999 41.9
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.9e-200 703.4 850 47.6
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 3.2e-199 699.9 701 51.8
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 5.7e-188 662.5 693 50.9
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 7.5e-188 662.1 869 45.1
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 1.3e-187 661.4 877 44.0
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 3.8e-184 649.8 858 45.1
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 2.2e-179 634.0 1141 38.7
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 1.3e-171 608.2 1022 38.0
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 5.2e-157 559.7 1076 34.1
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 8.1e-150 535.8 1194 31.8
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 8.7e-128 462.6 858 37.6
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 3.1e-125 454.1 301 78.7
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 2.2e-123 448.0 1038 31.0
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 6.2e-110 403.3 412 54.4
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 2.0e-92 345.1 312 61.2
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 1.8e-77 295.4 256 62.1
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 1.8e-77 295.4 946 27.0
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 5.2e-72 277.3 335 49.3
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.3e-70 272.7 1112 25.3
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 3.7e-70 271.2 254 56.7
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 5.9e-68 263.8 203 61.1
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 3.1e-61 241.5 415 36.4
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.7e-60 238.4 210 63.3
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 2.3e-59 235.3 407 36.1
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 8.0e-57 226.9 435 36.1
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 3.0e-56 224.9 210 58.6
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 5.0e-51 207.6 418 32.8
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 6.1e-49 200.7 248 50.8
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-44 186.4 158 66.5
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 1.2e-44 186.4 158 66.5
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 1.3e-38 166.4 529 27.4
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 3.5e-36 158.3 154 58.4
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 6.6e-35 154.1 165 53.3
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 1.6e-33 149.4 221 44.3
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 2.0e-31 142.5 85 82.4
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 1.2e-25 123.2 145 44.8
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.5e-23 116.3 796 21.9
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 2.5e-18 99.0 120 50.0
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.1e-13 83.6 90 51.1
FAN19G1054 Fragaria x ananassa HOM05D058803 ORTHO05D045847 1.0e-11 77.0 81 56.8
FvH4_1g06080 Fragaria vesca HOM05D058803 ORTHO05D045847 1.1e-10 73.6 81 55.6
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 4.8e-09 68.2 119 37.8


User provided reference genes

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