Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 0.0e+00 1556.6 814 100.0
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 0.0e+00 1474.1 812 94.2
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1473.8 812 94.1
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1461.0 812 93.3
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1457.6 812 93.3
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 0.0e+00 1343.6 915 79.9
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 0.0e+00 1325.1 818 84.4
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 0.0e+00 1285.8 817 82.1
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 0.0e+00 1276.9 812 81.8
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 2.2e-306 1055.4 838 67.2
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 7.6e-299 1030.4 828 67.6
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 3.4e-291 1005.0 844 64.5
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 1.4e-284 983.0 836 64.1
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 1.7e-282 976.1 968 57.2
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 5.0e-282 974.5 837 63.8
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 3.2e-281 971.8 839 63.6
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 5.5e-281 971.1 837 64.2
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 7.2e-281 970.7 836 63.5
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 8.8e-279 963.8 841 63.1
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 8.8e-279 963.8 832 62.7
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 1.5e-278 963.0 838 62.5
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 2.0e-278 962.6 811 64.1
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 5.7e-278 961.1 837 63.0
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 1.1e-276 956.8 838 62.5
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 4.1e-276 954.9 831 62.6
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 9.1e-276 953.7 837 62.0
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 2.0e-275 952.6 838 62.9
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.1e-273 946.8 835 61.4
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 4.2e-273 944.9 839 62.5
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.2e-273 944.1 838 62.5
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.2e-272 943.3 841 62.2
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 2.7e-272 942.2 838 62.1
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 2.3e-271 939.1 832 61.1
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.0e-271 938.7 836 61.6
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 1.7e-269 932.9 837 61.8
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 2.2e-269 932.6 828 61.1
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 4.1e-268 928.3 833 60.3
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 4.1e-268 928.3 838 61.9
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 5.3e-268 927.9 873 59.5
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.2e-265 918.7 841 59.5
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.2e-265 918.7 837 60.8
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 4.2e-265 918.3 840 61.0
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.2e-264 916.8 833 59.2
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.6e-262 909.1 832 59.3
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 1.8e-260 902.9 837 59.6
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.8e-260 902.9 837 59.7
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 3.1e-260 902.1 838 60.3
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 5.4e-260 901.4 838 60.3
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 5.4e-260 901.4 837 57.9
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.2e-258 896.0 840 58.6
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 1.9e-257 892.9 840 59.0
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 4.7e-256 888.3 807 60.7
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 2.3e-255 885.9 838 58.6
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 2.6e-254 882.5 866 57.3
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 2.2e-253 879.4 717 66.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 1.1e-252 877.1 952 52.7
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.7e-250 869.8 826 59.2
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.1e-249 867.1 834 57.6
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 6.4e-245 851.3 821 58.8
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 2.0e-243 846.3 839 57.0
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 3.0e-242 842.4 828 57.7
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.5e-241 840.1 840 57.1
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 8.6e-234 814.3 831 56.4
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 8.9e-231 804.3 851 53.9
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.1e-228 797.3 851 53.5
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 1.4e-228 797.0 831 53.9
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 1.9e-228 796.6 835 53.7
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 5.4e-228 795.0 842 53.9
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 6.0e-227 791.6 835 53.4
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.3e-226 789.6 800 55.2
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 8.6e-226 787.7 823 53.7
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 9.5e-225 784.3 841 53.0
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 4.7e-224 781.9 841 53.0
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 8.1e-224 781.2 841 53.2
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 3.1e-223 779.2 825 53.0
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 1.2e-222 777.3 825 53.7
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 7.6e-222 774.6 649 64.6
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.9e-220 770.0 985 46.8
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 7.1e-220 768.1 831 52.5
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.1e-217 760.8 838 51.8
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.1e-217 760.8 831 52.7
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 5.6e-217 758.4 823 52.1
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.2e-216 757.3 825 52.1
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 1.4e-215 753.8 824 51.8
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 1.8e-215 753.4 837 51.7
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 4.0e-215 752.3 843 50.8
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.1e-212 744.2 709 58.0
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.7e-211 739.6 839 51.7
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 3.5e-211 739.2 840 52.1
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 3.5e-211 739.2 814 52.0
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 6.0e-211 738.4 844 50.7
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 7.8e-211 738.0 813 50.4
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 4.0e-207 725.7 811 50.9
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.2e-206 724.2 842 52.6
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 3.4e-206 722.6 812 50.9
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 4.5e-206 722.2 814 50.5
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 5.8e-206 721.8 818 50.9
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.4e-204 717.2 841 51.0
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 5.1e-202 708.8 813 50.3
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 8.7e-202 708.0 816 50.7
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 1.5e-201 707.2 818 49.9
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 1.6e-200 703.7 836 50.2
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.6e-200 703.7 829 51.0
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 4.8e-200 702.2 702 56.6
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.1e-199 701.0 871 48.5
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 4.5e-198 695.7 815 49.2
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.5e-198 695.7 654 60.1
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 2.9e-197 693.0 831 49.2
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 2.7e-195 686.4 817 50.3
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 3.5e-195 686.0 814 47.9
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 3.7e-192 676.0 832 48.9
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.7e-192 676.0 665 57.3
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 4.8e-192 675.6 818 48.2
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.6e-190 669.8 666 56.9
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 4.5e-190 669.1 813 47.8
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 9.7e-185 651.4 764 51.2
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 6.9e-183 645.2 655 56.0
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 2.0e-182 643.7 822 47.0
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.0e-182 643.7 923 44.5
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 3.8e-181 639.4 829 47.4
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 2.1e-179 633.6 811 45.5
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 3.3e-177 626.3 827 45.2
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 6.3e-176 622.1 826 44.8
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.5e-172 610.1 610 56.9
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.0e-170 604.7 812 44.7
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 5.1e-170 602.4 649 52.9
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 5.5e-164 582.4 655 53.0
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 8.8e-162 575.1 819 42.4
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 5.7e-161 572.4 651 51.8
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.2e-160 570.5 821 42.1
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 5.3e-159 565.8 823 42.8
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 4.5e-158 562.8 823 43.3
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.3e-157 561.2 812 43.7
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 2.1e-155 553.9 648 50.3
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.9e-148 530.8 860 40.1
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.7e-144 517.7 858 41.8
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.6e-137 493.8 556 51.8
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 2.6e-137 493.8 865 39.2
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 1.3e-136 491.5 561 51.5
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.3e-128 464.9 842 37.6
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 1.1e-127 461.8 771 39.0
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 3.2e-127 460.3 756 41.5
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 1.6e-123 448.0 825 38.2
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.1e-123 447.6 539 47.1
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 4.4e-121 439.9 825 37.1
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 3.2e-119 433.7 438 54.1
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 5.4e-119 433.0 663 45.4
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 1.7e-104 384.8 467 48.0
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 2.4e-74 284.6 808 31.3
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-69 269.2 687 31.6
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.4e-68 263.1 438 42.9
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 1.1e-47 196.1 336 38.7
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 1.9e-47 195.3 300 42.3
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 7.2e-47 193.4 194 53.1
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.1e-44 186.0 119 72.3
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 1.7e-43 182.2 252 43.7
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 9.1e-42 176.4 251 41.8
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.5e-40 170.2 262 42.7
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 1.1e-39 169.5 187 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 7.2e-39 166.8 305 35.4
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 6.8e-37 160.2 290 39.7
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 4.5e-33 147.5 231 39.8
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 2.2e-32 145.2 126 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 4.2e-31 141.0 199 37.7
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 1.6e-30 139.0 117 63.2
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 8.3e-27 126.7 120 54.2
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 7.2e-23 113.6 116 53.4
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 6.1e-22 110.5 72 77.8
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 9.2e-18 96.7 111 49.5
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.5e-17 94.7 68 66.2
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 4.5e-17 94.4 120 45.0
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.9e-16 91.3 111 48.6
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.1e-15 89.7 153 36.6
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.6e-14 84.7 145 40.0
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.4e-13 82.8 72 48.6
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.3e-13 82.0 72 50.0
RcHm_v2.0_Chr5g0023731 Rosa chinensis HOM05D003622 ORTHO05D048666 3.1e-13 81.6 43 90.7
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 8.9e-13 80.1 87 46.0
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 8.9e-13 80.1 51 68.6
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.2e-12 79.7 72 47.2
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 6.4e-11 73.9 142 40.8
Cre08.g376200 Chlamydomonas reinhardtii HOM05D003622 ORTHO05D004453 5.0e-08 64.3 173 31.8
CBR_g27932 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-08 63.5 54 46.3
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 9.5e-07 60.1 53 56.6


User provided reference genes

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