Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-300 1035.4 561 100.0
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.4e-275 952.6 559 92.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.3e-273 943.3 575 90.1
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.1e-272 941.0 559 91.6
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-270 935.3 575 89.6
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.2e-269 930.2 575 88.9
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 9.2e-240 833.6 570 78.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 4.1e-232 808.1 566 76.7
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 5.4e-232 807.7 562 78.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.9e-225 784.6 563 76.6
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-214 749.2 563 74.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 3.9e-214 748.4 563 74.2
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.7e-209 733.0 562 70.1
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 3.8e-209 731.9 558 71.3
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.8e-203 713.0 560 68.2
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.1e-203 712.2 566 69.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.2e-200 702.2 578 68.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.3e-198 696.8 557 68.8
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.8e-198 696.4 557 67.7
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.1e-198 694.9 562 67.6
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.5e-197 692.6 561 67.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 7.4e-197 691.0 557 66.6
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.1e-196 689.5 558 66.7
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.8e-196 689.1 561 67.6
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 4.8e-196 688.3 566 65.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.8e-196 688.3 561 67.0
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.9e-194 681.4 566 64.5
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.4e-192 676.8 560 66.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.4e-192 676.8 558 64.2
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.5e-192 674.9 558 64.9
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 5.5e-192 674.9 557 66.8
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 5.5e-192 674.9 567 66.0
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 3.6e-191 672.2 557 65.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.3e-190 669.5 560 65.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 5.1e-190 668.3 559 65.3
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.7e-190 667.9 558 63.4
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 8.7e-190 667.5 561 64.7
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.3e-189 665.2 559 64.9
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.3e-188 663.7 563 63.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.6e-188 663.3 559 63.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 8.2e-188 661.0 559 64.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 8.2e-188 661.0 556 64.6
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-187 659.8 562 64.8
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.5e-186 656.8 560 63.0
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 4.5e-186 655.2 565 63.5
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.0e-185 654.1 561 62.9
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.0e-185 654.1 565 64.1
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.2e-185 652.9 559 64.4
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 4.6e-183 645.2 561 60.6
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 4.6e-183 645.2 559 61.7
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 3.0e-182 642.5 566 62.5
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.0e-182 642.5 555 63.1
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 3.9e-182 642.1 556 63.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 5.1e-182 641.7 555 63.1
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.5e-181 640.2 559 63.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 9.7e-181 637.5 564 61.3
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.7e-180 636.7 566 62.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.7e-180 636.7 564 61.9
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-179 634.0 558 61.1
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.1e-179 634.0 559 62.4
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.4e-179 633.6 557 61.9
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.6e-178 629.4 560 61.1
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 5.9e-178 628.2 563 60.7
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.4e-176 623.6 558 61.5
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.2e-175 620.5 565 61.4
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.0e-174 617.5 557 60.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.4e-174 617.1 561 61.0
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 2.3e-174 616.3 662 54.1
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 4.4e-173 612.1 556 62.6
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.8e-172 608.6 562 58.9
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.2e-172 607.8 525 66.1
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 8.2e-172 607.8 560 58.4
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 3.1e-171 605.9 556 59.2
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.6e-170 603.6 563 58.6
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.6e-170 603.6 559 60.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.6e-170 602.8 564 57.6
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.9e-169 599.4 562 58.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 5.0e-169 598.6 565 57.9
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 8.5e-169 597.8 561 58.8
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.6e-167 593.6 581 58.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.6e-167 593.6 581 58.2
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 6.1e-167 591.7 563 59.7
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.0e-166 589.0 499 69.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.5e-165 587.0 554 57.6
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.0e-165 586.6 552 56.9
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 3.3e-165 585.9 573 57.6
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 3.3e-165 585.9 563 56.7
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 8.2e-164 581.3 569 56.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.7e-162 576.2 562 58.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 4.5e-162 575.5 554 54.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.5e-162 575.5 567 57.1
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.5e-160 569.7 567 57.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 5.5e-160 568.5 563 57.4
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 7.2e-160 568.2 563 57.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 7.2e-160 568.2 566 57.4
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.7e-159 566.2 564 57.8
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 3.6e-159 565.8 565 56.3
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 6.1e-159 565.1 572 55.2
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.5e-157 560.5 568 56.5
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 8.5e-153 544.7 582 54.0
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 9.5e-152 541.2 572 54.4
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.5e-141 507.3 552 50.2
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.3e-140 504.2 424 65.6
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-140 504.2 467 66.2
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 2.9e-140 503.1 413 66.6
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.4e-139 500.7 561 54.2
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.0e-138 496.9 446 60.5
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.7e-132 477.2 560 50.9
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.9e-129 466.1 424 61.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 3.1e-126 456.4 558 45.9
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-121 440.7 486 59.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.9e-121 439.5 560 46.8
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.6e-119 433.0 300 74.3
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 8.1e-119 431.8 561 46.5
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 8.4e-116 421.8 281 77.2
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 9.2e-115 418.3 370 61.1
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 7.6e-109 398.7 563 42.5
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 3.3e-104 383.3 564 42.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 7.3e-104 382.1 568 40.8
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 1.1e-99 368.2 389 55.0
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.2e-99 366.7 236 86.4
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 3.8e-92 343.2 478 46.0
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-84 318.5 511 43.2
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-84 318.2 225 75.6
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 5.1e-81 306.2 308 56.2
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.2e-75 287.0 355 50.1
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-69 268.5 291 60.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.6e-66 258.1 173 74.0
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.7e-60 238.0 411 37.0
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.0e-60 236.5 157 75.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-58 229.9 139 87.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-54 217.6 139 83.5
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-51 206.5 119 90.8
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 6.1e-50 203.0 119 89.1
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 9.7e-48 195.7 165 73.3
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-46 190.7 165 76.4
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.5e-44 182.6 140 67.9
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-41 172.6 353 37.1
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-40 170.2 174 67.2
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.4e-38 165.2 139 58.3
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-36 157.9 159 66.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-32 143.7 88 85.2
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-28 131.0 90 78.9
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.5e-24 118.6 112 59.8
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-23 115.5 175 40.0
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.3e-20 104.8 102 49.0
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 9.5e-19 99.4 116 60.3
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.2e-15 88.2 56 69.6
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 6.4e-15 86.7 95 55.8
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-14 84.0 56 76.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 7.0e-14 83.2 43 88.4
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-11 74.3 40 92.5
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-10 72.4 52 75.0
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-09 69.3 36 91.7
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 5.8e-08 63.5 61 55.7
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.7e-07 62.0 46 65.2
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 1.1e-06 59.3 41 65.9
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.1e-06 57.4 41 68.3
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 4.1e-06 57.4 49 59.2
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 5.4e-06 57.0 43 62.8


User provided reference genes

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