Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 4.3e-87 324.7 173 100.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.7e-64 247.7 179 76.0
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.5e-63 245.7 179 76.5
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.3e-63 245.4 179 76.0
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.2e-57 226.9 160 75.6
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 5.5e-34 148.3 179 55.3
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.0e-19 98.6 178 39.3
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.2e-17 94.0 181 39.2
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.2e-17 94.0 164 43.3
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.7e-17 92.8 165 41.8
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 4.7e-17 92.0 159 39.6
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.0e-16 90.9 181 39.2
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.8e-16 90.1 169 41.4
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 2.3e-16 89.7 167 37.1
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 6.8e-16 88.2 172 38.4
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 8.8e-16 87.8 167 36.5
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.8e-16 87.8 165 42.4
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-15 87.0 151 40.4
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 2.6e-15 86.3 163 38.7
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.6e-15 86.3 169 39.1
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.5e-15 84.7 164 41.5
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 4.8e-14 82.0 173 36.4
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 1.8e-13 80.1 159 39.0
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 5.4e-13 78.6 158 36.7
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 7.0e-13 78.2 159 36.5
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.0e-13 78.2 87 56.3
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.2e-12 77.4 166 38.0
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.2e-12 77.4 177 36.2
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.6e-12 77.0 163 38.0
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.6e-12 77.0 141 36.2
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 2.7e-12 76.3 153 35.9
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 3.5e-12 75.9 161 39.1
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 4.5e-12 75.5 140 37.9
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.5e-12 75.5 167 38.3
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 4.5e-12 75.5 105 44.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 7.7e-12 74.7 159 38.4
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 1.0e-11 74.3 151 37.1
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.0e-11 74.3 103 44.7
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.0e-11 74.3 161 37.3
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 1.3e-11 73.9 153 35.9
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 1.7e-11 73.6 166 41.0
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.7e-11 73.6 83 54.2
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 1.7e-11 73.6 152 38.8
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.2e-11 73.2 152 36.8
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.2e-11 73.2 152 36.8
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.2e-11 73.2 142 42.3
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.2e-11 73.2 156 35.3
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.2e-11 73.2 103 43.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-11 72.8 70 58.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 2.9e-11 72.8 171 37.4
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 2.9e-11 72.8 182 34.6
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.8e-11 72.4 153 36.6
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.8e-11 72.4 153 36.6
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.5e-11 71.6 79 51.9
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.1e-10 70.9 188 34.0
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 1.5e-10 70.5 183 34.4
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.5e-10 70.5 87 48.3
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.9e-10 70.1 88 46.6
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.5e-10 69.7 66 54.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.2e-10 69.3 108 42.6
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 3.2e-10 69.3 79 54.4
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.2e-10 69.3 111 42.3
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.2e-10 69.3 65 56.9
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 4.2e-10 68.9 156 36.5
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 5.5e-10 68.6 103 45.6
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.5e-10 68.6 74 52.7
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.5e-10 68.6 75 52.0
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 5.5e-10 68.6 153 33.3
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 9.4e-10 67.8 134 37.3
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 9.4e-10 67.8 67 52.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 9.4e-10 67.8 146 37.7
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.2e-09 67.4 173 35.3
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.6 162 34.6
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 2.1e-09 66.6 161 35.4
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.1e-09 66.6 157 34.4
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 2.1e-09 66.6 164 34.8
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.6 91 51.6
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.7e-09 66.2 172 34.3
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.7e-09 66.2 173 35.3
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 2.7e-09 66.2 98 41.8
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.7e-09 66.2 92 44.6
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 2.7e-09 66.2 171 32.7
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.6e-09 65.9 154 32.5
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 3.6e-09 65.9 61 54.1
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.7e-09 65.5 69 55.1
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.7e-09 65.5 76 43.4
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 8.0e-09 64.7 152 32.9
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 8.0e-09 64.7 69 53.6
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 1.0e-08 64.3 141 34.0
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.0e-08 64.3 162 35.8
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 1.0e-08 64.3 149 36.2
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.4e-08 63.9 155 31.6
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.8e-08 63.5 67 47.8
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 1.8e-08 63.5 168 33.9
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.3e-08 63.2 67 49.3
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.3e-08 63.2 111 38.7
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 2.3e-08 63.2 81 46.9
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.3e-08 63.2 150 33.3
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.0e-08 62.8 67 49.3
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.0e-08 62.8 111 37.8
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.0e-08 62.4 109 39.4
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.0e-08 62.4 85 45.9
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.2e-08 62.0 151 33.1
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 5.2e-08 62.0 150 33.3
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 6.8e-08 61.6 68 48.5
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 6.8e-08 61.6 136 36.8
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 6.8e-08 61.6 136 36.8
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 6.8e-08 61.6 155 33.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 6.8e-08 61.6 155 33.5
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 6.8e-08 61.6 61 54.1
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 8.8e-08 61.2 143 33.6
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 8.8e-08 61.2 60 48.3
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.5e-07 60.5 137 32.1
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-07 60.5 111 36.9
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-07 60.5 111 36.9
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 1.5e-07 60.5 110 35.5
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 1.5e-07 60.5 65 52.3
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 2.0e-07 60.1 88 42.0
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.0e-07 60.1 89 43.8
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.0e-07 60.1 117 35.9
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.0e-07 60.1 104 38.5
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 2.6e-07 59.7 161 34.2
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 3.4e-07 59.3 74 41.9
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.4e-07 58.9 65 52.3
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.4e-07 58.9 165 31.5
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 4.4e-07 58.9 146 33.6
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.7e-07 58.5 69 46.4
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 5.7e-07 58.5 167 32.3
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 5.7e-07 58.5 165 31.5
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 5.7e-07 58.5 117 40.2
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 7.5e-07 58.2 154 31.8
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.5e-07 58.2 65 47.7
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.5e-07 58.2 150 32.0
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 9.8e-07 57.8 140 30.0
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 9.8e-07 57.8 140 30.0
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 9.8e-07 57.8 62 51.6
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.8e-07 57.8 113 37.2
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.3e-06 57.4 153 32.0
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.3e-06 57.4 65 46.2
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 1.3e-06 57.4 94 43.6
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.3e-06 57.4 172 32.6
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.3e-06 57.4 73 47.9
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.3e-06 57.4 73 47.9
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.7e-06 57.0 95 38.9
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 2.2e-06 56.6 67 50.7
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 2.8e-06 56.2 65 44.6
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.8e-06 56.2 111 41.4
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 3.7e-06 55.8 163 33.7
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 3.7e-06 55.8 73 47.9
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 4.9e-06 55.5 76 43.4
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 4.9e-06 55.5 76 43.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 4.9e-06 55.5 142 31.7
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.9e-06 55.5 165 30.9
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 4.9e-06 55.5 68 50.0
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 6.3e-06 55.1 63 50.8
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 6.3e-06 55.1 54 53.7
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.3e-06 55.1 69 44.9
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.3e-06 55.1 76 43.4
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 8.3e-06 54.7 89 39.3
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 8.3e-06 54.7 76 43.4


User provided reference genes

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