Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0086671 Rosa chinensis HOM05D001431 ORTHO05D001268 1.3e-102 376.3 178 100.0
FvH4_1g01721 Fragaria vesca HOM05D001431 ORTHO05D001268 1.1e-66 256.9 145 83.4
FAN19G1266 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.1e-66 256.9 145 83.4
Prupe.7G254800 Prunus persica HOM05D001431 ORTHO05D001268 2.0e-18 96.7 174 39.7
TWI34G1362 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 3.3e-18 95.9 155 39.4
QL02p091314 Quercus lobata HOM05D001431 ORTHO05D001268 1.3e-17 94.0 143 39.9
Psat0ss25082g0080 Pisum sativum HOM05D001431 ORTHO05D001268 3.7e-17 92.4 130 41.5
Lj6g0025598 Lotus japonicus HOM05D001431 ORTHO05D001268 4.8e-17 92.0 140 40.0
TPR.G22802 Trifolium pratense HOM05D001431 ORTHO05D001268 4.8e-17 92.0 129 42.6
Glyma.15G202100 Glycine max HOM05D001431 ORTHO05D001268 1.4e-16 90.5 135 40.7
Ca_27061_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 2.4e-16 89.7 130 41.5
Gohir.A06G050000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 4.1e-16 89.0 138 40.6
Glyma.09G095800 Glycine max HOM05D001431 ORTHO05D001268 5.3e-16 88.6 135 40.0
Peaxi162Scf00391g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 6.9e-16 88.2 155 35.5
ClCG06G012050 Citrullus lanatus HOM05D001431 ORTHO05D001268 1.2e-15 87.4 142 38.0
Psat4g033120 Pisum sativum HOM05D001431 ORTHO05D001268 1.5e-15 87.0 141 39.0
Thecc.09G141800 Theobroma cacao HOM05D001431 ORTHO05D001268 1.5e-15 87.0 139 38.8
TPR.G15780 Trifolium pratense HOM05D001431 ORTHO05D001268 1.5e-15 87.0 143 40.6
Haze_19319 Corylus avellana HOM05D001431 ORTHO05D001268 2.0e-15 86.7 148 41.2
arahy.Tifrunner.gnm1.ann1.KMWM4V Arachis hypogaea HOM05D001431 ORTHO05D001268 2.6e-15 86.3 146 38.4
CiPaw.15G181700 Carya illinoinensis HOM05D001431 ORTHO05D001268 2.6e-15 86.3 124 43.5
Gorai.010G056200 Gossypium raimondii HOM05D001431 ORTHO05D001268 2.6e-15 86.3 137 38.0
Lalb_Chr07g0179511 Lupinus albus HOM05D001431 ORTHO05D001268 2.6e-15 86.3 125 39.2
CsaV3_1G028510 Cucumis sativus L. HOM05D001431 ORTHO05D001268 4.5e-15 85.5 123 40.7
Duzib168G0421 Durio zibethinus HOM05D001431 ORTHO05D001268 4.5e-15 85.5 145 37.9
Glyma.13G157400 Glycine max HOM05D001431 ORTHO05D001268 4.5e-15 85.5 138 40.6
Medtr2g461190 Medicago truncatula HOM05D001431 ORTHO05D001268 5.9e-15 85.1 154 35.7
Medtr4g116530 Medicago truncatula HOM05D001431 ORTHO05D001268 5.9e-15 85.1 134 40.3
MELO3C010262.2 Cucumis melo HOM05D001431 ORTHO05D001268 7.7e-15 84.7 143 37.1
QL02p091271 Quercus lobata HOM05D001431 ORTHO05D001268 1.0e-14 84.3 143 35.0
VMungo1309G2763 Vigna mungo HOM05D001431 ORTHO05D001268 1.3e-14 84.0 135 41.5
Oeu042713.1 Olea europaea HOM05D001431 ORTHO05D001268 2.2e-14 83.2 172 38.4
Cfa020891 Carpinus fangiana HOM05D001431 ORTHO05D001268 2.9e-14 82.8 163 37.4
Sopen07g003180 Solanum pennellii HOM05D001431 ORTHO05D001268 5.0e-14 82.0 166 36.7
Glyma.17G105000 Glycine max HOM05D001431 ORTHO05D001268 6.5e-14 81.6 137 40.9
Phvul.009G209600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 8.5e-14 81.3 148 37.2
VMungo1215G3003 Vigna mungo HOM05D001431 ORTHO05D001268 1.1e-13 80.9 107 43.9
Solyc07g007130.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 1.9e-13 80.1 138 39.9
Hma1.2p1_0949F.1_g240600 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 4.2e-13 79.0 138 39.1
Manes.14G138600 Manihot esculenta HOM05D001431 ORTHO05D001268 4.2e-13 79.0 120 36.7
PGSC0003DMG400030698 Solanum tuberosum HOM05D001431 ORTHO05D001268 4.2e-13 79.0 154 37.7
CAN.G518.20 Capsicum annuum HOM05D001431 ORTHO05D001268 5.5e-13 78.6 136 40.4
Phvul.003G174800 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 9.4e-13 77.8 113 41.6
Hma1.2p1_1784F.1_g302160 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.2e-12 77.4 138 38.4
PGR142G0349 Punica granatum HOM05D001431 ORTHO05D001268 1.2e-12 77.4 151 35.8
Cc06_g07420 Coffea canephora HOM05D001431 ORTHO05D001268 1.6e-12 77.0 120 40.0
Duzib168G0286 Durio zibethinus HOM05D001431 ORTHO05D001268 2.1e-12 76.6 128 35.2
Nitab4.5_0011752g0010 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.1e-12 76.6 155 34.2
CANSAT11G0265 Cannabis sativa HOM05D001431 ORTHO05D001268 2.7e-12 76.3 74 54.1
Ah.14g078760 Amaranthus hybridus HOM05D001431 ORTHO05D001268 8.0e-12 74.7 140 34.3
Ciclev10010491m.g Citrus clementina HOM05D001431 ORTHO05D001268 1.4e-11 73.9 130 36.9
Duzib187G1758 Durio zibethinus HOM05D001431 ORTHO05D001268 1.4e-11 73.9 126 35.7
Rhsim03G0254500 Rhododendron simsii HOM05D001431 ORTHO05D001268 1.4e-11 73.9 144 36.8
COL.COLO4_18913 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.8e-11 73.6 152 33.6
COL.COLO4_24101 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.8e-11 73.6 106 43.4
Atru.chr7.261 Acer truncatum HOM05D001431 ORTHO05D001268 6.7e-11 71.6 120 35.0
TAR626G1912 Trochodendron aralioides HOM05D001431 ORTHO05D001268 6.7e-11 71.6 125 37.6
Duzib187G1968 Durio zibethinus HOM05D001431 ORTHO05D001268 8.8e-11 71.2 153 34.0
Actinidia26350 Actinidia chinensis HOM05D000320 ORTHO05D000532 1.1e-10 70.9 109 40.4
Eucgr.C00435 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.1e-10 70.9 160 33.1
Hma1.2p1_0182F.1_g080500 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 2.0e-10 70.1 122 37.7
Sed0026439 Sechium edule HOM05D001431 ORTHO05D001268 2.0e-10 70.1 87 43.7
MBI15_g10642_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 3.3e-10 69.3 134 35.8
Potri.018G114200 Populus trichocarpa HOM05D001431 ORTHO05D001268 3.3e-10 69.3 140 36.4
Sabra18G0097100 Salix brachista HOM05D001431 ORTHO05D001268 3.3e-10 69.3 148 33.8
Sc18g0000050 Simmondsia chinensis HOM05D001431 ORTHO05D001268 3.3e-10 69.3 118 39.0
AT5G25240 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 5.7e-10 68.6 142 31.0
MSTRG.6092 Avicennia marina HOM05D001431 ORTHO05D001268 5.7e-10 68.6 140 36.4
AUR62011255 Chenopodium quinoa HOM05D001431 ORTHO05D001268 5.7e-10 68.6 134 34.3
Peaxi162Scf00108g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 5.7e-10 68.6 150 34.7
Lalb_Chr11g0072871 Lupinus albus HOM05D001431 ORTHO05D001268 7.4e-10 68.2 126 37.3
Peaxi162Scf01184g00110 Petunia axillaris HOM05D001431 ORTHO05D001268 7.4e-10 68.2 88 43.2
EL10Ac8g18816 Beta vulgaris HOM05D001431 ORTHO05D001268 9.7e-10 67.8 124 36.3
Cpa.g.sc187.26 Carica papaya HOM05D001431 ORTHO05D001268 9.7e-10 67.8 122 34.4
Gohir.D06G102000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 9.7e-10 67.8 148 33.1
Peaxi162Scf00108g00003 Petunia axillaris HOM05D001431 ORTHO05D001268 9.7e-10 67.8 88 44.3
Sabra06G0202700 Salix brachista HOM05D001431 ORTHO05D001268 9.7e-10 67.8 135 34.1
Gorai.010G117000 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.3e-09 67.4 149 32.2
Actinidia14101 Actinidia chinensis HOM05D001431 ORTHO05D001268 2.2e-09 66.6 119 34.5
Ah.09g223880 Amaranthus hybridus HOM05D001431 ORTHO05D001268 2.8e-09 66.2 87 43.7
AUR62041452 Chenopodium quinoa HOM05D001431 ORTHO05D001268 2.8e-09 66.2 131 35.1
Gohir.A06G099800 Gossypium hirsutum HOM05D001431 ORTHO05D001268 2.8e-09 66.2 148 31.1
Nn8g39717 Nelumbo nucifera HOM05D001431 ORTHO05D001268 2.8e-09 66.2 146 31.5
Peaxi162Scf01184g00111 Petunia axillaris HOM05D001431 ORTHO05D001268 2.8e-09 66.2 150 33.3
Potri.006G259300 Populus trichocarpa HOM05D001431 ORTHO05D001268 3.7e-09 65.9 138 32.6
THA.LOC104814117 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 3.7e-09 65.9 136 32.4
TAR383G0017 Trochodendron aralioides HOM05D001431 ORTHO05D001268 6.3e-09 65.1 121 34.7
Manes.16G126000 Manihot esculenta HOM05D001431 ORTHO05D001268 8.2e-09 64.7 126 34.1
THA.LOC104802406 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 1.1e-08 64.3 94 37.2
CSS0009490 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.8e-08 63.5 123 34.1
CARHR188250 Cardamine hirsuta HOM05D001431 ORTHO05D001268 2.4e-08 63.2 133 32.3
MSTRG.26316 Avicennia marina HOM05D001431 ORTHO05D001268 3.1e-08 62.8 149 30.2
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 5.3e-08 62.0 101 36.6
ATR0629G087 Amborella trichopoda HOM05D001431 ORTHO05D001268 7.0e-08 61.6 141 34.0
AL6G36880 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 7.0e-08 61.6 145 34.5
Thhalv10012875m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 7.0e-08 61.6 93 41.9
BNapus_Darmor_BZH_scaffold_133p00050 Brassica napus HOM05D001431 ORTHO05D001268 9.1e-08 61.2 102 35.3
BraA01t04663Z Brassica rapa HOM05D001431 ORTHO05D001268 9.1e-08 61.2 102 35.3
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 9.1e-08 61.2 101 36.6
BNapus_Darmor_BZH_scaffold_119p00060 Brassica napus HOM05D001431 ORTHO05D001268 1.2e-07 60.8 100 35.0
BNapus_Darmor_BZH_scaffold_97p00370 Brassica napus HOM05D001431 ORTHO05D001268 1.2e-07 60.8 100 35.0
DCAR_020906 Daucus carota HOM05D001431 ORTHO05D001268 1.2e-07 60.8 137 31.4
BolC2t12031H Brassica oleracea HOM05D001431 ORTHO05D001268 1.6e-07 60.5 137 32.8
BcaB08g36939 Brassica carinata HOM05D001431 ORTHO05D001268 2.0e-07 60.1 91 38.5
BcaB08g36941 Brassica carinata HOM05D001431 ORTHO05D001268 2.0e-07 60.1 91 38.5
BcaC09g47663 Brassica carinata HOM05D001431 ORTHO05D001268 2.0e-07 60.1 101 35.6
C02p59750 Brassica napus HOM05D001431 ORTHO05D001268 2.0e-07 60.1 137 32.8
BolC1t05955H Brassica oleracea HOM05D001431 ORTHO05D001268 2.0e-07 60.1 101 35.6
Migut.K00665 Erythranthe guttata HOM05D001431 ORTHO05D001268 2.0e-07 60.1 145 33.1
FAN27G3025 Fragaria x ananassa HOM05D001431 ORTHO05D001268 2.0e-07 60.1 153 31.4
Potri.006G190100 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.0e-07 60.1 128 33.6
BraA02t08948Z Brassica rapa HOM05D001431 ORTHO05D001268 2.6e-07 59.7 137 32.8
Migut.K00377 Erythranthe guttata HOM05D001431 ORTHO05D001268 2.6e-07 59.7 147 34.0
THA.LOC104821066 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 2.6e-07 59.7 93 37.6
Carub.0008s0841 Capsella rubella HOM05D001431 ORTHO05D001268 3.5e-07 59.3 95 37.9
ECA236G0145 Erigeron canadensis HOM05D001431 ORTHO05D001268 3.5e-07 59.3 89 38.2
Glyma.04G180800 Glycine max HOM05D001431 ORTHO05D001268 3.5e-07 59.3 150 30.7
Glyma.06G184300 Glycine max HOM05D001431 ORTHO05D001268 3.5e-07 59.3 119 31.9
Sabra01G0101900 Salix brachista HOM05D001431 ORTHO05D001268 3.5e-07 59.3 134 29.9
Aa31LG11G14610 Aethionema arabicum HOM05D001101 ORTHO05D000893 4.5e-07 58.9 97 39.2
Lsat_1_v5_gn_8_63180 Lactuca sativa HOM05D001431 ORTHO05D001268 4.5e-07 58.9 156 31.4
MD15G1130700 Malus domestica HOM05D001431 ORTHO05D001268 4.5e-07 58.9 95 36.8
QL02p091284 Quercus lobata HOM05D001431 ORTHO05D001268 4.5e-07 58.9 128 33.6
Migut.K00653 Erythranthe guttata HOM05D001431 ORTHO05D001268 5.9e-07 58.5 140 35.7
Sp6g29150 Schrenkiella parvula HOM05D001431 ORTHO05D001268 5.9e-07 58.5 94 37.2
BolC9t59064H Brassica oleracea HOM05D001431 ORTHO05D001268 7.7e-07 58.2 100 34.0
FvH4_2g28310 Fragaria vesca HOM05D001431 ORTHO05D001268 7.7e-07 58.2 153 30.7
Manes.03G011900 Manihot esculenta HOM05D001431 ORTHO05D001268 7.7e-07 58.2 117 36.8
CARHR075540 Cardamine hirsuta HOM05D001431 ORTHO05D001268 1.3e-06 57.4 95 35.8
CiPaw.07G227000 Carya illinoinensis HOM05D001431 ORTHO05D001268 1.3e-06 57.4 157 28.0
Eucgr.C02729 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.3e-06 57.4 124 31.5
HanXRQChr06g0181721 Helianthus annuus HOM05D001431 ORTHO05D001268 1.3e-06 57.4 149 30.2
Prupe.1G486100 Prunus persica HOM05D001431 ORTHO05D001268 1.3e-06 57.4 127 35.4
AT5G14895 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 1.7e-06 57.0 94 39.4
A02p39860 Brassica napus HOM05D001431 ORTHO05D001268 1.7e-06 57.0 137 32.1
CARHR156750 Cardamine hirsuta HOM05D001431 ORTHO05D001268 1.7e-06 57.0 103 34.0
ECA240G3019 Erigeron canadensis HOM05D001431 ORTHO05D001268 1.7e-06 57.0 150 32.0
HanXRQChr05g0137941 Helianthus annuus HOM05D001431 ORTHO05D001268 1.7e-06 57.0 88 35.2
Aa31LG11G9500 Aethionema arabicum HOM05D001431 ORTHO05D001268 2.2e-06 56.6 94 37.2
AT3G01430 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 2.2e-06 56.6 104 33.7
Carub.0006s1304 Capsella rubella HOM05D001101 ORTHO05D000893 2.2e-06 56.6 93 38.7
CAN.G781.33 Capsicum annuum HOM05D001431 ORTHO05D001268 2.2e-06 56.6 97 35.1
Ciclev10010338m.g Citrus clementina HOM05D001431 ORTHO05D001268 2.2e-06 56.6 87 35.6
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 2.2e-06 56.6 142 33.8
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.2e-06 56.6 95 35.8
Thhalv10005131m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 2.9e-06 56.2 144 32.6
FAN20G3221 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.8e-06 55.8 153 29.4
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 3.8e-06 55.8 117 35.9
RcHm_v2.0_Chr6g0297221 Rosa chinensis HOM05D001431 ORTHO05D001268 3.8e-06 55.8 95 40.0
Sed0005869 Sechium edule HOM05D001431 ORTHO05D001268 3.8e-06 55.8 154 29.2
Migut.J01269 Erythranthe guttata HOM05D001431 ORTHO05D001268 5.0e-06 55.5 164 29.9
HanXRQChr03g0064021 Helianthus annuus HOM05D001431 ORTHO05D001268 5.0e-06 55.5 162 29.0
Potri.012G078300 Populus trichocarpa HOM05D001431 ORTHO05D001268 5.0e-06 55.5 116 35.3
Sp2g22300 Schrenkiella parvula HOM05D001431 ORTHO05D001268 5.0e-06 55.5 147 32.7
Sed0025664 Sechium edule HOM05D001431 ORTHO05D001268 5.0e-06 55.5 108 37.0
AL6G25670 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 6.5e-06 55.1 93 38.7
Ca_21613_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 6.5e-06 55.1 67 46.3
Duzib264G0305 Durio zibethinus HOM05D001431 ORTHO05D001268 6.5e-06 55.1 149 28.2
Oeu047316.1 Olea europaea HOM05D001431 ORTHO05D001268 6.5e-06 55.1 92 38.0
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 6.5e-06 55.1 141 31.9
AL3G10750 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 8.5e-06 54.7 101 34.7
Lsat_1_v5_gn_7_47921 Lactuca sativa HOM05D001431 ORTHO05D001268 8.5e-06 54.7 164 31.7
Lalb_Chr08g0236341 Lupinus albus HOM05D001431 ORTHO05D001268 8.5e-06 54.7 142 28.9
Manes.15G180800 Manihot esculenta HOM05D001431 ORTHO05D001268 8.5e-06 54.7 103 36.9
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 8.5e-06 54.7 101 35.6
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 8.5e-06 54.7 95 34.7
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 8.5e-06 54.7 95 34.7


User provided reference genes

Program Settings