Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 1.2e-78 296.6 172 100.0
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 6.9e-61 237.7 148 83.1
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 3.8e-59 231.9 151 80.8
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.1e-58 230.3 126 86.5
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 1.1e-58 230.3 149 81.2
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 5.4e-58 228.0 148 79.7
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.1e-58 227.6 125 86.4
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 9.3e-58 227.3 126 85.7
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 7.8e-57 224.2 131 82.4
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 3.9e-56 221.9 146 80.1
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.9e-55 219.5 130 79.2
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 3.3e-55 218.8 147 79.6
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 5.6e-55 218.0 151 68.9
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 5.6e-55 218.0 125 80.0
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 5.6e-55 218.0 130 78.5
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 7.3e-55 217.6 125 79.2
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 9.6e-55 217.2 146 79.5
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 1.6e-54 216.5 125 79.2
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 4.8e-54 214.9 125 79.2
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 4.0e-53 211.8 180 62.2
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.5e-52 209.9 148 75.7
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 2.0e-52 209.5 124 79.8
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 2.6e-52 209.1 125 77.6
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.5e-52 208.4 125 74.4
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 4.5e-52 208.4 130 75.4
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 4.5e-52 208.4 130 75.4
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 9.9e-52 207.2 125 73.6
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.7e-51 206.5 125 76.8
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.7e-51 206.5 125 74.4
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 2.9e-51 205.7 124 76.6
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 6.4e-51 204.5 118 80.5
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.9e-50 203.0 125 75.2
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 1.9e-50 203.0 150 67.3
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 2.4e-50 202.6 146 75.3
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 2.4e-50 202.6 146 74.0
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 7.1e-50 201.1 147 72.1
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 7.1e-50 201.1 119 78.2
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 1.6e-49 199.9 120 79.2
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.7e-49 199.1 145 72.4
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 3.5e-49 198.7 118 78.0
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.0e-48 197.2 147 65.3
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 1.8e-48 196.4 150 70.0
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 1.8e-48 196.4 117 76.1
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 3.0e-48 195.7 135 68.1
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 3.0e-48 195.7 122 73.0
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 3.0e-48 195.7 126 74.6
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 3.9e-48 195.3 150 67.3
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 6.7e-48 194.5 125 71.2
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.1e-47 193.7 128 70.3
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.5e-47 193.4 121 73.6
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 1.5e-47 193.4 121 73.6
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 1.5e-47 193.4 126 72.2
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 3.3e-47 192.2 125 71.2
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 4.3e-47 191.8 151 67.5
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 2.1e-46 189.5 152 65.8
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 2.1e-46 189.5 130 66.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.7e-46 188.7 130 68.5
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 4.8e-46 188.3 125 69.6
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 1.4e-45 186.8 110 78.2
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 2.4e-45 186.0 150 68.0
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.4e-45 186.0 126 73.0
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 2.4e-45 186.0 130 69.2
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 3.1e-45 185.7 122 71.3
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 3.1e-45 185.7 125 70.4
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 3.1e-45 185.7 150 67.3
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 9.0e-45 184.1 100 87.0
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 3.4e-44 182.2 130 67.7
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 4.5e-44 181.8 112 72.3
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 4.5e-44 181.8 150 64.0
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 7.6e-44 181.0 150 62.0
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 9.9e-44 180.6 130 66.9
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 1.3e-43 180.3 126 68.3
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 1.7e-43 179.9 130 67.7
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 2.9e-43 179.1 130 66.9
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 2.9e-43 179.1 130 66.9
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 2.9e-43 179.1 130 66.9
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 2.9e-43 179.1 130 66.9
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 3.8e-43 178.7 130 66.9
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 3.8e-43 178.7 125 69.6
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 3.8e-43 178.7 130 66.2
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 4.9e-43 178.3 130 66.2
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 4.9e-43 178.3 130 66.9
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 6.4e-43 177.9 131 67.9
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 8.4e-43 177.6 125 66.4
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.1e-42 177.2 130 64.6
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 1.1e-42 177.2 129 66.7
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 1.9e-42 176.4 111 73.9
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 3.2e-42 175.6 125 68.0
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 4.2e-42 175.3 118 69.5
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 7.1e-42 174.5 131 65.6
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 7.1e-42 174.5 100 78.0
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 7.1e-42 174.5 125 65.6
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 9.3e-42 174.1 125 66.4
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.2e-41 173.7 109 75.2
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 2.1e-41 172.9 131 65.6
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 2.1e-41 172.9 117 69.2
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 2.1e-41 172.9 118 68.6
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 2.1e-41 172.9 168 54.2
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 2.1e-41 172.9 118 66.9
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.1e-41 172.9 104 77.9
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.1e-41 172.9 104 77.9
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 3.5e-41 172.2 117 70.1
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 4.6e-41 171.8 130 63.1
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 6.0e-41 171.4 99 78.8
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 6.0e-41 171.4 125 67.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.9e-40 168.7 122 63.9
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 5.1e-40 168.3 122 63.9
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.1e-39 167.2 106 74.5
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 4.8e-38 161.8 121 63.6
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 1.8e-37 159.8 131 62.6
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 2.4e-37 159.5 122 61.5
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 7.6e-36 154.5 87 81.6
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 1.1e-34 150.6 104 66.3
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 9.3e-34 147.5 84 78.6
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 7.4e-31 137.9 100 63.0
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.3e-27 127.1 78 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 1.6e-25 120.2 101 53.5
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 3.6e-25 119.0 101 50.5
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 4.3e-23 112.1 101 49.5
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 7.4e-23 111.3 125 49.6
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 4.8e-22 108.6 61 77.0
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 6.3e-22 108.2 61 78.7
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.8e-21 106.7 65 72.3
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.8e-21 106.7 101 49.5
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 1.0e-19 100.9 98 50.0
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.3e-19 100.5 69 66.7
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.7e-19 100.1 61 72.1
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 3.8e-19 99.0 70 70.0
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.1e-17 93.2 61 67.2
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.4e-16 90.5 60 63.3
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.5e-15 87.0 85 48.2
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 5.7e-15 85.1 57 68.4
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 2.0e-12 76.6 49 71.4
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.2e-09 67.4 52 59.6
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.1e-09 66.6 48 56.2
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 3.6e-09 65.9 96 33.3
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 1.0e-08 64.3 34 82.4
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 2.3e-08 63.2 117 30.8


User provided reference genes

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