Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.2e-230 802.7 397 100.0
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 2.5e-175 619.0 350 90.6
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 7.9e-161 570.9 360 83.3
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 5.8e-156 554.7 350 80.0
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.7e-142 510.0 350 74.3
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.7e-142 510.0 350 72.0
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.5e-138 496.1 397 65.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 2.1e-137 493.0 314 75.2
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.0e-136 490.7 321 75.4
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 6.7e-136 488.0 351 69.2
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.6e-135 486.1 409 63.8
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 4.5e-132 475.3 348 69.3
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.8e-131 472.2 350 67.4
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 3.0e-128 462.6 349 68.2
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.8e-126 456.1 349 69.1
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.8e-126 456.1 315 69.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 6.3e-126 454.9 349 66.5
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 8.2e-126 454.5 313 69.6
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 8.2e-126 454.5 347 66.9
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 4.5e-124 448.7 319 68.7
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 7.7e-124 448.0 351 66.7
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 2.2e-123 446.4 344 64.5
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 2.9e-123 446.0 347 65.1
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 3.8e-123 445.7 360 64.2
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 6.5e-123 444.9 347 64.8
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 6.5e-123 444.9 401 59.6
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 6.5e-123 444.9 401 59.6
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 4.7e-121 438.7 314 67.2
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 4.7e-121 438.7 315 67.3
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 6.1e-121 438.3 340 66.5
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.0e-120 435.6 350 64.6
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.0e-119 433.3 311 66.6
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 3.4e-119 432.6 347 63.1
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.7e-118 430.3 348 64.1
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 6.3e-118 428.3 321 66.7
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 3.1e-117 426.0 338 64.8
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.1e-117 425.6 333 63.7
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.3e-117 425.2 288 71.2
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.7e-116 422.9 361 62.0
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.7e-115 420.2 368 59.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.8e-115 419.1 347 60.5
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.2e-113 414.1 313 65.5
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 6.8e-112 408.3 350 60.6
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 2.0e-111 406.8 377 58.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 9.8e-111 404.4 345 60.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.7e-110 403.7 260 75.0
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 8.3e-110 401.4 322 63.7
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 8.3e-110 401.4 322 63.7
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.1e-109 401.0 320 62.5
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 2.7e-108 396.4 300 65.7
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.9e-106 390.2 356 57.3
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.9e-106 390.2 417 51.6
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.9e-106 390.2 329 61.4
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 4.2e-106 389.0 312 60.3
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.2e-106 389.0 311 60.8
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.2e-105 387.5 317 61.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 2.1e-105 386.7 316 62.7
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.7e-105 385.6 277 69.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.8e-104 383.6 318 61.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.3e-104 383.3 320 60.9
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.3e-104 383.3 316 62.3
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.2e-103 380.9 319 61.1
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 5.7e-103 378.6 317 61.5
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 9.8e-103 377.9 316 60.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.3e-102 377.5 401 50.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.7e-102 375.9 330 60.0
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 4.9e-102 375.6 347 59.4
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.2e-101 372.9 282 64.9
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.5e-100 369.0 327 58.4
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.7e-99 367.1 329 57.1
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 3.9e-99 365.9 327 57.8
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.6e-99 364.8 287 62.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.9e-98 363.6 302 62.3
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 8.0e-97 358.2 353 56.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 8.0e-97 358.2 308 59.1
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 8.0e-97 358.2 308 59.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.8e-96 357.1 278 65.1
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 8.9e-96 354.8 279 63.4
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 8.9e-96 354.8 230 77.0
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.7e-94 350.5 348 55.2
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.1e-93 347.8 276 60.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 2.7e-92 343.2 330 53.0
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 4.6e-92 342.4 240 70.0
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.0e-91 341.3 316 55.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.3e-90 335.9 291 57.7
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.2e-87 327.8 237 69.6
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 7.5e-87 325.1 221 71.0
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.1e-85 321.2 337 51.0
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.4e-85 318.9 223 69.5
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 9.2e-85 318.2 228 68.4
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 3.5e-84 316.2 229 68.6
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.1e-82 311.2 341 50.4
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.5e-82 310.1 241 64.3
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.6e-81 307.4 359 49.9
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.1e-81 305.1 276 56.9
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.0e-79 300.4 225 68.0
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 2.6e-79 300.1 347 49.9
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.7e-78 296.2 338 47.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.2e-77 293.1 323 52.9
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 5.4e-77 292.4 231 63.6
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.6e-76 289.3 310 48.4
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 5.1e-75 285.8 219 65.3
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 3.3e-74 283.1 314 50.0
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.8e-72 277.3 183 74.9
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.4e-72 276.9 319 48.6
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 8.9e-72 275.0 149 83.2
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.3e-70 271.2 237 57.8
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.9e-66 257.3 316 48.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 7.3e-66 255.4 144 88.9
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 9.0e-64 248.4 326 42.9
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.6e-63 245.4 323 41.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.4e-61 240.4 200 58.0
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.5e-55 221.1 182 63.7
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.4e-55 219.9 224 54.5
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.7e-54 217.6 163 66.3
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.2e-54 217.2 261 46.7
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 2.4e-53 213.8 279 42.3
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.6e-49 201.1 159 60.4
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.5e-47 194.5 100 91.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.5e-45 187.2 131 66.4
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 2.3e-43 180.6 108 89.8
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.3e-41 174.9 166 53.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 6.7e-35 152.5 85 83.5
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.5e-34 151.4 115 65.2
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.8e-33 147.1 178 46.6
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.8e-32 144.4 104 68.3
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 4.5e-23 113.2 73 86.3
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.0e-22 112.1 92 58.7
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 7.2e-21 105.9 73 84.9
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.8e-16 91.3 59 86.4
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 3.1e-16 90.5 67 82.1
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 2.0e-15 87.8 76 67.1
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.0e-14 85.5 79 54.4
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-12 78.6 66 54.5
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.0e-11 75.5 103 45.6
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 9.7e-10 68.9 64 50.0


User provided reference genes

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