Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 7.7e-79 297.0 140 100.0
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.4e-64 247.7 129 90.7
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.4e-64 247.7 125 92.0
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 1.2e-63 246.5 123 94.3
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 1.7e-62 242.7 123 90.2
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 3.9e-62 241.5 125 86.4
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 5.0e-62 241.1 125 87.2
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 8.1e-60 233.8 126 84.9
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.4e-59 233.0 124 86.3
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.4e-59 233.0 122 86.9
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 2.3e-59 232.3 124 84.7
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 3.1e-59 231.9 122 86.1
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 4.0e-59 231.5 122 86.1
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.0e-59 231.5 124 86.3
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 4.0e-59 231.5 122 87.7
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 4.0e-59 231.5 126 82.5
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 5.2e-59 231.1 134 78.4
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 6.8e-59 230.7 124 83.9
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.2e-58 229.9 124 87.1
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 2.0e-58 229.2 122 86.1
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 2.0e-58 229.2 124 83.1
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.0e-58 229.2 124 84.7
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 2.0e-58 229.2 122 86.1
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 2.6e-58 228.8 124 85.5
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 3.4e-58 228.4 125 83.2
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 3.4e-58 228.4 122 84.4
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 4.4e-58 228.0 126 81.0
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 7.5e-58 227.3 125 83.2
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.3e-57 226.5 125 85.6
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 1.3e-57 226.5 124 83.1
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.3e-57 226.5 123 82.9
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 1.7e-57 226.1 130 80.0
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 1.7e-57 226.1 125 82.4
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.7e-57 226.1 130 81.5
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.2e-57 225.7 118 86.4
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.2e-57 225.7 131 83.2
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 2.9e-57 225.3 122 83.6
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 4.9e-57 224.6 123 85.4
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 4.9e-57 224.6 130 80.0
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 4.9e-57 224.6 122 83.6
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 8.3e-57 223.8 122 85.2
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 1.1e-56 223.4 122 82.0
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.1e-56 223.4 123 85.4
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 1.2e-55 219.9 125 80.0
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.6e-55 219.5 122 82.8
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 2.1e-55 219.2 122 81.1
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 2.7e-55 218.8 122 81.1
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.5e-55 218.4 123 82.1
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 3.5e-55 218.4 122 82.8
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 7.8e-55 217.2 125 78.4
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 1.0e-54 216.9 122 79.5
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 2.3e-54 215.7 121 76.9
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 2.3e-54 215.7 124 79.0
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.9e-54 214.9 125 78.4
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 3.9e-54 214.9 114 85.1
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 5.1e-54 214.5 139 74.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 5.1e-54 214.5 122 77.0
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.5e-53 213.0 122 76.2
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.5e-53 212.2 122 78.7
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 2.5e-53 212.2 122 77.9
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 2.5e-53 212.2 126 78.6
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 4.3e-53 211.5 122 79.5
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 5.6e-53 211.1 122 75.4
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 7.3e-53 210.7 122 76.2
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 9.5e-53 210.3 116 82.8
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 2.8e-52 208.8 117 81.2
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 3.6e-52 208.4 114 82.5
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 6.2e-52 207.6 125 77.6
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.4e-51 206.5 122 74.6
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 1.4e-51 206.5 122 75.4
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 1.8e-51 206.1 124 74.2
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 2.3e-51 205.7 122 75.4
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 4.0e-51 204.9 107 85.0
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 1.5e-50 203.0 126 75.4
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 2.6e-50 202.2 205 52.7
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 5.8e-50 201.1 125 73.6
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 7.6e-50 200.7 117 77.8
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 9.9e-50 200.3 117 76.9
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.7e-49 199.5 117 76.9
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.7e-49 199.5 117 76.9
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.7e-49 199.5 117 76.9
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 3.8e-49 198.4 117 75.2
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 3.8e-49 198.4 175 57.1
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 8.4e-49 197.2 117 78.6
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 3.2e-48 195.3 145 66.9
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 9.2e-48 193.7 122 71.3
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 1.9e-45 186.0 119 68.1
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 6.2e-44 181.0 126 66.7
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 4.6e-39 164.9 87 85.1
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.1e-37 160.2 90 81.1
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 2.5e-37 159.1 90 81.1
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 3.6e-36 155.2 111 59.5
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 1.8e-35 152.9 103 68.9
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 9.0e-35 150.6 91 73.6
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 1.7e-33 146.4 89 71.9
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 6.4e-33 144.4 113 61.1
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 2.7e-31 139.0 82 76.8
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.1e-29 133.7 81 72.8
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 6.2e-28 127.9 71 78.9
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.0e-26 122.9 68 80.9
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.3e-20 103.6 54 83.3
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.8e-19 99.8 71 69.0
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 1.5e-18 96.7 81 58.0
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.9e-14 82.0 48 79.2
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 8.7e-14 80.9 49 75.5
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-13 80.5 46 78.3
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 4.3e-13 78.6 62 59.7
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 4.3e-13 78.6 49 73.5
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 2.4e-11 72.8 56 62.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 6.9e-11 71.2 34 88.2
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 5.5e-08 61.6 56 55.4


User provided reference genes

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