Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-85 319.3 153 100.0
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 5.3e-81 304.3 153 96.7
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 4.6e-77 291.2 142 98.6
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 8.8e-76 287.0 148 95.9
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.9e-70 269.2 143 90.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.9e-70 269.2 143 90.2
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 2.5e-70 268.9 143 90.2
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.5e-70 268.9 143 90.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.5e-70 268.9 143 90.2
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 4.4e-67 258.1 126 96.8
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.2e-66 255.8 143 84.6
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 2.2e-66 255.8 129 94.6
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 4.5e-64 248.1 141 83.7
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 8.5e-63 243.8 126 92.9
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 3.6e-61 238.4 136 83.1
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.6e-56 223.0 135 79.3
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 4.5e-56 221.5 132 78.8
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 2.9e-55 218.8 140 74.3
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 6.5e-55 217.6 138 73.2
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 6.5e-55 217.6 142 73.2
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 1.1e-54 216.9 142 72.5
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.1e-54 216.9 132 76.5
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.9e-54 216.1 139 69.8
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 2.5e-54 215.7 143 68.5
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 3.2e-54 215.3 139 69.1
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 5.5e-54 214.5 138 72.5
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 9.4e-54 213.8 134 73.9
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 9.4e-54 213.8 132 75.0
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 6.1e-53 211.1 134 72.4
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.0e-52 210.3 143 67.8
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.0e-52 210.3 143 67.8
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 1.0e-52 210.3 143 67.8
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 1.4e-52 209.9 143 67.1
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.8e-52 209.5 132 71.2
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.0e-52 208.8 134 71.6
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 5.2e-52 208.0 139 68.3
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 1.2e-51 206.8 132 71.2
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 9.8e-51 203.8 139 66.2
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.7e-50 203.0 135 68.1
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-50 203.0 127 80.3
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.8e-50 202.2 132 67.4
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 2.8e-50 202.2 129 72.1
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 3.7e-50 201.8 139 66.9
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 5.4e-49 198.0 132 73.5
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 7.0e-49 197.6 132 64.4
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 9.1e-49 197.2 136 66.9
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 1.2e-48 196.8 135 70.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.3e-47 193.4 135 68.9
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.3e-47 193.4 135 68.9
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.9e-46 189.5 147 63.9
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 2.5e-46 189.1 146 62.3
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.5e-46 189.1 140 67.1
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.2e-46 188.7 135 65.9
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 4.2e-46 188.3 135 65.9
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 4.2e-46 188.3 133 66.9
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 7.2e-46 187.6 135 66.7
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 9.4e-46 187.2 143 64.3
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.1e-45 186.0 132 68.2
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.6e-45 185.3 135 64.4
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 4.7e-45 184.9 136 64.0
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 6.1e-45 184.5 140 65.0
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 6.1e-45 184.5 130 69.2
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 8.0e-45 184.1 136 63.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 8.0e-45 184.1 135 63.7
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.0e-44 183.7 136 63.2
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.4e-44 183.3 136 63.2
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.4e-44 183.3 135 63.7
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.8e-44 183.0 146 62.3
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.3e-44 182.6 146 61.6
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 3.0e-44 182.2 144 59.0
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 3.0e-44 182.2 144 59.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 4.0e-44 181.8 142 59.2
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 5.2e-44 181.4 139 61.9
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 6.8e-44 181.0 139 61.9
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.2e-43 180.3 136 62.5
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.5e-43 179.9 137 63.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.0e-43 179.5 136 62.5
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-43 179.1 136 61.8
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 2.6e-43 179.1 136 62.5
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 2.6e-43 179.1 136 61.8
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 3.4e-43 178.7 137 62.8
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 3.4e-43 178.7 137 62.8
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 3.4e-43 178.7 137 62.8
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 3.4e-43 178.7 136 61.8
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 3.4e-43 178.7 136 61.8
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 3.4e-43 178.7 133 61.7
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 3.4e-43 178.7 148 61.5
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 4.4e-43 178.3 136 61.8
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 4.4e-43 178.3 136 61.8
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.4e-43 178.3 133 64.7
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 5.7e-43 177.9 137 62.8
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.7e-42 176.4 133 63.9
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 2.2e-42 176.0 131 64.1
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 4.9e-42 174.9 134 62.7
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 6.3e-42 174.5 136 59.6
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 8.3e-42 174.1 142 55.6
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.1e-41 173.7 143 57.3
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.4e-41 173.3 140 60.7
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 2.4e-41 172.6 147 60.5
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 2.4e-41 172.6 147 60.5
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 7.3e-38 161.0 122 64.8
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.6e-37 159.8 132 59.8
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 2.2e-34 149.4 98 65.3
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.5e-32 142.1 103 67.0
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 3.6e-29 132.1 129 52.7
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 3.6e-29 132.1 129 52.7
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.6e-29 132.1 98 65.3
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.0e-28 130.6 102 62.7
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 4.9e-26 121.7 99 61.6
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.4e-25 119.4 88 64.8
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.7e-24 115.9 132 48.5
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 5.0e-23 111.7 135 43.0
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 6.2e-21 104.8 110 57.3
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 4.0e-20 102.1 130 46.2
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 4.0e-20 102.1 130 46.2
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 4.0e-20 102.1 130 46.2
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 4.0e-20 102.1 130 46.2
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 4.0e-20 102.1 130 46.2
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.1e-17 94.0 161 37.3
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 4.7e-13 78.6 55 60.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 4.7e-13 78.6 51 64.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 8.1e-13 77.8 52 63.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 1.1e-12 77.4 51 62.7
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 1.1e-12 77.4 51 62.7
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.4e-12 77.0 50 76.0
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 1.8e-12 76.6 51 62.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.9e-09 66.6 75 45.3
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 6.0e-08 61.6 40 65.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 7.8e-08 61.2 40 65.0
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 1.0e-07 60.8 47 59.6
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 6.6e-07 58.2 39 56.4
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 1.5e-06 57.0 46 54.3
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 7.3e-06 54.7 42 64.3


User provided reference genes

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