Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 4.8e-288 994.2 658 100.0
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 7.1e-191 671.4 666 66.7
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.2e-175 619.4 499 75.4
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 2.0e-153 547.0 583 65.4
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.1e-146 523.1 687 56.5
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 4.8e-62 243.4 517 39.8
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 6.2e-62 243.0 455 40.4
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 1.5e-44 185.3 391 37.3
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 7.7e-44 183.0 430 35.8
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 1.1e-42 179.1 470 34.0
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 4.8e-38 163.7 530 30.6
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.5e-36 158.7 455 34.7
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 2.0e-31 141.7 437 32.5
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 2.6e-31 141.4 419 34.6
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 1.7e-30 138.7 443 30.9
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 3.7e-30 137.5 437 35.2
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 5.3e-29 133.7 445 31.0
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 1.2e-28 132.5 438 34.5
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 2.0e-28 131.7 443 32.7
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 3.5e-28 131.0 498 30.3
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 4.2e-26 124.0 482 32.8
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 3.6e-25 120.9 444 30.6
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.4e-24 119.0 459 29.2
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 1.5e-23 115.5 436 31.7
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 4.4e-23 114.0 414 31.2
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 5.7e-23 113.6 228 37.7
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 1.7e-22 112.1 446 30.0
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 1.7e-22 112.1 415 33.3
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 3.7e-22 110.9 238 38.2
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.5e-20 104.0 472 29.7
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 5.9e-20 103.6 453 27.8
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.0e-19 102.8 470 29.4
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 3.8e-19 100.9 365 29.3
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 5.0e-19 100.5 455 29.2
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 6.5e-19 100.1 486 26.3
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 6.5e-19 100.1 382 28.5
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 8.5e-19 99.8 454 31.5
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.9e-18 98.6 238 36.6
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.5e-18 98.2 464 27.8
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 5.5e-18 97.1 438 28.3
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 8.0e-17 93.2 431 27.1
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 8.0e-17 93.2 483 28.6
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 1.8e-16 92.0 364 26.6
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 6.8e-16 90.1 391 28.1
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.5e-15 89.0 455 27.3
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 3.4e-15 87.8 391 27.6
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 4.4e-15 87.4 234 34.6
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 5.7e-15 87.0 401 24.9
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 7.5e-15 86.7 381 27.3
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 9.8e-15 86.3 493 26.4
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 9.8e-15 86.3 272 31.2
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.3e-14 85.9 255 29.8
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.3e-14 85.9 411 30.9
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 2.8e-14 84.7 429 27.3
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 3.7e-14 84.3 323 27.6
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 1.1e-13 82.8 357 25.8
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.8e-13 82.0 453 27.2
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.8e-13 82.0 453 27.2
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 1.8e-13 82.0 391 28.4
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 3.1e-13 81.3 249 31.3
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 5.4e-13 80.5 493 26.2
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 7.0e-13 80.1 426 26.5
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.7e-12 78.2 405 24.0
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 2.7e-12 78.2 431 28.5
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 7.7e-12 76.6 460 25.4
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.0e-11 76.3 303 30.0
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.3e-11 75.1 419 29.4
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 2.3e-11 75.1 286 30.1
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.9e-11 74.7 358 29.3
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.9e-11 74.7 424 28.8
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 3.8e-11 74.3 258 29.5
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 5.0e-11 73.9 381 28.6
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 1.1e-10 72.8 280 28.2
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 3.2e-10 71.2 180 35.6
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 4.2e-10 70.9 278 28.4
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 4.2e-10 70.9 390 25.6
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 5.5e-10 70.5 472 25.4
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 7.2e-10 70.1 257 29.6
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 7.2e-10 70.1 442 26.9
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 7.2e-10 70.1 396 27.3
CiPaw.16G108200 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.6e-09 68.9 284 32.0
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 3.6e-09 67.8 385 29.1
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 4.7e-09 67.4 182 31.3
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 8.0e-09 66.6 361 28.3
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 1.0e-08 66.2 446 22.9
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.0e-08 66.2 233 28.3
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 1.4e-08 65.9 174 31.6
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 3.0e-08 64.7 219 30.6
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 6.8e-08 63.5 503 26.8
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 6.8e-08 63.5 220 27.7
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.5e-07 62.4 382 29.1
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 2.6e-07 61.6 439 22.3
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 3.4e-07 61.2 179 27.9
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 4.4e-07 60.8 208 32.2
QL02p093534 Quercus lobata HOM05D003426 ORTHO05D003816 4.4e-07 60.8 204 33.8
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 4.4e-07 60.8 358 29.9
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 7.5e-07 60.1 229 30.6
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 7.5e-07 60.1 226 27.9
QL02p093555 Quercus lobata HOM05D003426 ORTHO05D003816 7.5e-07 60.1 212 33.5
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 9.8e-07 59.7 430 26.3
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 2.2e-06 58.5 176 29.0
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 2.2e-06 58.5 290 25.5
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 6.3e-06 57.0 259 26.3
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 6.3e-06 57.0 406 26.4
Sed0023941 Sechium edule HOM05D003426 ORTHO05D003816 6.3e-06 57.0 227 29.1


User provided reference genes

Program Settings