Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 4.8e-208 727.6 375 100.0
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 8.7e-186 653.7 364 92.9
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.2e-181 639.0 385 87.3
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.9e-181 638.6 391 86.4
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.9e-178 628.2 396 84.8
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.8e-162 576.2 379 78.6
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 4.1e-159 565.1 380 77.6
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 5.7e-145 518.1 374 71.9
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.1e-143 513.8 367 75.7
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 3.3e-140 502.3 376 70.2
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 4.9e-136 488.4 378 68.5
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 2.7e-134 482.6 374 66.8
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 1.6e-131 473.4 367 65.4
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 1.0e-130 470.7 382 64.1
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 1.8e-130 469.9 369 66.7
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 2.0e-129 466.5 374 65.0
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 6.0e-126 454.9 369 64.5
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 1.3e-125 453.8 367 63.5
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 2.3e-125 453.0 371 62.3
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 1.2e-123 447.2 386 62.2
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 8.0e-123 444.5 351 64.4
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 3.4e-121 439.1 386 61.9
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 4.4e-121 438.7 367 62.9
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 1.3e-120 437.2 364 63.2
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 1.3e-120 437.2 373 61.4
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 2.9e-120 436.0 364 62.1
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.1e-119 434.1 373 60.9
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.4e-119 433.7 358 64.8
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 1.9e-119 433.3 364 61.0
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.4e-119 433.0 385 61.0
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 3.2e-119 432.6 364 62.4
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 1.3e-117 427.2 365 61.1
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 1.7e-117 426.8 381 59.1
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 2.3e-117 426.4 380 62.9
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 2.3e-117 426.4 467 52.0
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 4.0e-114 415.6 383 58.0
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 1.5e-113 413.7 364 60.2
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 2.0e-113 413.3 344 63.1
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 3.7e-112 409.1 378 57.1
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 3.2e-111 406.0 372 57.5
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 3.2e-111 406.0 372 57.5
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 4.1e-111 405.6 386 57.3
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 9.2e-111 404.4 366 57.9
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 3.5e-110 402.5 370 59.5
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 2.3e-109 399.8 369 56.6
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 3.0e-109 399.4 401 54.4
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 6.6e-109 398.3 361 57.6
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 8.6e-109 397.9 378 57.9
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 2.5e-108 396.4 400 56.2
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 3.3e-108 396.0 377 57.0
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 4.3e-108 395.6 362 59.7
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 7.3e-108 394.8 365 59.5
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.6e-107 393.7 416 54.3
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.8e-106 390.2 390 52.6
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.9e-104 382.9 370 56.8
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 6.4e-104 381.7 409 50.4
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 8.4e-104 381.3 396 52.8
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 1.4e-103 380.6 340 59.7
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 4.2e-103 379.0 346 58.7
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 7.1e-103 378.3 414 51.7
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.2e-102 377.5 369 54.2
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 1.2e-102 377.5 376 54.3
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 1.5e-100 370.5 394 53.0
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 1.6e-99 367.1 388 52.6
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 6.2e-99 365.2 376 53.2
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 8.1e-99 364.8 384 53.1
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 1.1e-98 364.4 363 54.0
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 2.4e-98 363.2 286 67.5
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 9.0e-98 361.3 318 59.7
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 2.0e-97 360.1 433 49.7
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 3.4e-97 359.4 372 51.6
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 5.8e-97 358.6 372 52.2
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 9.9e-97 357.8 371 52.3
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 1.7e-96 357.1 318 57.2
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 7.3e-92 341.7 428 47.0
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 2.1e-91 340.1 388 51.8
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 3.6e-91 339.3 399 49.1
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.3e-88 330.9 292 60.3
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.9e-88 329.7 305 58.4
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.9e-88 329.7 305 58.4
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 9.3e-87 324.7 359 51.8
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.0e-85 321.2 374 49.2
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 5.1e-85 318.9 322 52.2
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 1.9e-84 317.0 317 54.3
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.6e-83 313.9 346 51.2
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 4.5e-81 305.8 452 40.5
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 5.8e-81 305.4 361 47.4
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 5.5e-79 298.9 376 44.4
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 8.2e-75 285.0 362 45.3
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 2.8e-67 260.0 291 50.5
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 6.9e-66 255.4 174 68.4
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.7e-64 250.8 370 41.1
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 5.0e-64 249.2 370 41.1
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 1.0e-56 224.9 422 37.0
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 2.1e-54 217.2 178 57.9
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 3.3e-52 209.9 375 37.9
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 3.7e-51 206.5 291 44.7
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 6.1e-46 189.1 161 55.9
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.7e-43 181.0 147 59.9
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.5e-39 166.0 161 54.0
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 6.1e-38 162.5 184 50.5
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 4.0e-37 159.8 127 66.1
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.7e-25 120.6 91 67.0
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 2.7e-25 120.6 91 67.0
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 2.9e-24 117.1 151 49.7
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 6.1e-22 109.4 108 54.6
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.2e-20 105.1 151 43.7
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.2e-20 105.1 153 41.8
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 1.7e-19 101.3 333 26.7
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 1.2e-09 68.6 61 57.4
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 7.8e-09 65.9 97 45.4


User provided reference genes

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