Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 3.3e-54 215.7 204 100.0
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.1e-52 209.1 204 95.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.0e-52 208.8 108 98.1
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.0e-52 208.8 108 98.1
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 9.0e-52 207.6 204 94.6
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 4.5e-51 205.3 107 97.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.9e-50 202.6 108 95.4
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.9e-50 202.6 115 93.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 4.9e-50 201.8 108 94.4
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 4.6e-48 195.3 106 93.4
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 7.9e-48 194.5 102 96.1
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.3e-47 193.7 106 92.5
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.8e-47 193.4 106 92.5
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.8e-47 193.4 106 92.5
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.3e-47 193.0 107 89.7
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.0e-47 192.6 106 90.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 3.0e-47 192.6 106 92.5
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.0e-47 192.6 106 91.5
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.0e-47 192.6 106 91.5
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 5.1e-47 191.8 106 91.5
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 5.1e-47 191.8 106 91.5
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 5.1e-47 191.8 107 90.7
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 8.7e-47 191.0 107 87.9
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.1e-46 190.7 106 89.6
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.5e-46 190.3 106 89.6
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 2.5e-46 189.5 108 86.1
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 2.5e-46 189.5 106 89.6
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 2.5e-46 189.5 106 88.7
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 2.5e-46 189.5 106 88.7
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 2.5e-46 189.5 108 88.9
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.3e-46 189.1 107 88.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 3.3e-46 189.1 106 90.6
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 4.3e-46 188.7 108 87.0
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 5.7e-46 188.3 106 88.7
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 7.4e-46 188.0 105 88.6
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 7.4e-46 188.0 106 87.7
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 9.6e-46 187.6 106 87.7
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.3e-45 187.2 108 86.1
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 3.7e-45 185.7 106 87.7
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 4.8e-45 185.3 109 88.1
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 4.8e-45 185.3 109 88.1
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 6.3e-45 184.9 104 88.5
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 6.3e-45 184.9 108 89.8
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 6.3e-45 184.9 108 85.2
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 6.3e-45 184.9 108 85.2
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.2e-45 184.5 107 86.0
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 8.2e-45 184.5 107 87.9
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 8.2e-45 184.5 107 87.9
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 8.2e-45 184.5 106 86.8
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.1e-44 184.1 106 86.8
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 1.8e-44 183.3 107 85.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 2.4e-44 183.0 104 86.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.4e-44 183.0 104 87.5
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.4e-44 183.0 108 84.3
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.4e-44 183.0 107 87.9
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 3.1e-44 182.6 106 85.8
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 3.1e-44 182.6 108 85.2
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.1e-44 182.6 107 86.0
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.1e-44 182.2 105 85.7
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 4.1e-44 182.2 105 85.7
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.3e-44 181.8 107 85.0
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 5.3e-44 181.8 107 85.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.3e-44 181.8 105 87.6
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 5.3e-44 181.8 107 88.8
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 5.3e-44 181.8 103 88.3
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.9e-44 181.4 106 84.9
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 6.9e-44 181.4 106 84.0
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.6e-43 179.5 106 84.0
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.4e-43 179.1 103 87.4
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 84.0
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 83.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.5e-43 178.7 106 84.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.5e-43 178.7 107 86.0
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 4.5e-43 178.7 105 83.8
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 4.5e-43 178.7 105 83.8
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 5.9e-43 178.3 106 86.8
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 7.6e-43 177.9 107 83.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 7.6e-43 177.9 106 83.0
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.6e-43 177.9 106 83.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 7.6e-43 177.9 106 86.8
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.0e-42 177.6 106 82.1
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.7e-42 176.8 103 86.4
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.7e-42 176.8 103 86.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.2e-42 176.4 108 80.6
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 110 84.5
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.2e-42 176.4 106 82.1
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 5.0e-42 175.3 108 80.6
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 5.0e-42 175.3 102 84.3
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 6.5e-42 174.9 107 81.3
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 8.5e-42 174.5 106 81.1
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 8.5e-42 174.5 108 79.6
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 8.5e-42 174.5 108 79.6
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 8.5e-42 174.5 108 79.6
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 8.5e-42 174.5 108 79.6
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.5e-42 174.5 105 81.9
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.1e-41 174.1 106 80.2
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.4e-41 173.7 101 83.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.4e-41 173.7 101 83.2
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.5e-41 172.9 106 81.1
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 2.5e-41 172.9 108 78.7
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 3.2e-41 172.6 103 82.5
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 4.2e-41 172.2 101 83.2
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 7.2e-41 171.4 108 79.6
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 7.2e-41 171.4 108 79.6
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 7.2e-41 171.4 108 79.6
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 7.2e-41 171.4 108 79.6
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.6e-40 170.2 104 80.8
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.1e-40 169.9 132 71.2
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 4.6e-40 168.7 130 69.2
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 6.1e-40 168.3 110 77.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 6.1e-40 168.3 110 77.3
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 3.0e-39 166.0 105 81.0
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.5e-38 162.9 97 82.5
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 9.7e-38 161.0 108 75.9
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 9.7e-38 161.0 108 75.9
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 9.7e-38 161.0 103 78.6
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-35 154.1 186 52.2
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.0e-35 153.3 107 70.1
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.9e-34 149.4 106 71.7
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 2.9e-34 149.4 165 53.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.1e-32 143.3 109 67.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 4.6e-32 142.1 78 89.7
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.9e-31 139.0 191 46.6
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 6.7e-31 138.3 77 90.9
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 6.7e-31 138.3 77 89.6
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 2.0e-30 136.7 79 87.3
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.7e-29 133.7 121 64.5
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.7e-29 132.5 71 88.7
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.4e-27 125.9 225 39.6
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 7.7e-27 124.8 65 96.9
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 7.7e-27 124.8 65 96.9
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.7e-26 123.6 81 76.5
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.0e-26 122.1 79 74.7
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 7.9e-24 114.8 69 82.6
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 2.0e-22 110.2 76 69.7
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-20 102.1 76 71.1
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 5.3e-20 102.1 137 52.6
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 7.7e-19 98.2 82 65.9
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 7.7e-19 98.2 107 57.9
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.0e-18 97.8 72 66.7
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.5e-17 94.0 102 52.0
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 2.1e-16 90.1 63 69.8
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 6.1e-16 88.6 115 48.7
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.0e-15 87.8 72 63.9
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 8.8e-15 84.7 77 59.7
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 8.8e-15 84.7 77 59.7
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 8.8e-15 84.7 77 59.7
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 5.3e-12 75.5 48 83.3
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.6e-11 73.9 43 88.4
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.6e-11 73.9 43 88.4
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 3.5e-11 72.8 34 97.1
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 5.9e-11 72.0 88 50.0
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 3.6e-08 62.8 45 71.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.0e-07 61.2 43 74.4
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.3e-07 60.1 40 75.0
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-06 57.4 42 69.0
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 4.4e-06 55.8 39 71.8
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 5.7e-06 55.5 38 73.7
A09p52080 Brassica napus HOM05D004131 ORTHO05D004778 7.5e-06 55.1 31 83.9


User provided reference genes

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