Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0084681 Rosa chinensis HOM05D000045 ORTHO05D000611 3.4e-39 164.5 80 100.0
FvH4_2g17602 Fragaria vesca HOM05D000045 ORTHO05D000611 8.2e-17 90.1 44 93.2
RcHm_v2.0_Chr6g0282571 Rosa chinensis HOM05D000045 ORTHO05D000611 2.4e-16 88.6 44 90.9
Prupe.8G188400 Prunus persica HOM05D000045 ORTHO05D000611 1.7e-14 82.4 44 81.8
CANSAT01G1376 Cannabis sativa HOM05D000045 ORTHO05D000611 5.0e-14 80.9 44 79.5
Cpa.g.sc8.54 Carica papaya HOM05D000045 ORTHO05D000611 5.0e-14 80.9 65 60.0
CiPaw.13G057800 Carya illinoinensis HOM05D000045 ORTHO05D000611 6.5e-14 80.5 44 79.5
MD05G1156300 Malus domestica HOM05D000045 ORTHO05D000611 6.5e-14 80.5 44 79.5
Thecc.01G209200 Theobroma cacao HOM05D000045 ORTHO05D000611 1.5e-13 79.3 65 60.0
Duzib133G0678 Durio zibethinus HOM05D000045 ORTHO05D000611 1.9e-13 79.0 65 60.0
Hma1.2p1_0161F.1_g071570 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 3.2e-13 78.2 44 75.0
Manes.13G055600 Manihot esculenta HOM05D000045 ORTHO05D000611 4.2e-13 77.8 44 79.5
COL.COLO4_07042 Corchorus olitorius HOM05D000045 ORTHO05D000611 5.5e-13 77.4 65 58.5
TWI18G0572 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 5.5e-13 77.4 44 77.3
Glyma.18G154100 Glycine max HOM05D000045 ORTHO05D000611 7.2e-13 77.0 43 79.1
QL05p019482 Quercus lobata HOM05D000045 ORTHO05D000611 9.4e-13 76.6 44 75.0
QL09p047388 Quercus lobata HOM05D000045 ORTHO05D000611 9.4e-13 76.6 44 75.0
Potri.002G239400 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.2e-12 76.3 44 77.3
ClCG09G007820 Citrullus lanatus HOM05D000045 ORTHO05D000611 1.6e-12 75.9 44 72.7
CsaV3_7G027310 Cucumis sativus L. HOM05D000045 ORTHO05D000611 1.6e-12 75.9 44 72.7
Migut.N00673 Erythranthe guttata HOM05D000045 ORTHO05D000611 1.6e-12 75.9 65 58.5
Phvul.008G138000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 2.1e-12 75.5 44 72.7
VMungo1383G0949 Vigna mungo HOM05D000045 ORTHO05D000611 2.1e-12 75.5 44 72.7
Haze_03581 Corylus avellana HOM05D000045 ORTHO05D000611 2.7e-12 75.1 44 75.0
Psat3g151960 Pisum sativum HOM05D000045 ORTHO05D000611 3.6e-12 74.7 44 75.0
Gohir.D07G202400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 4.7e-12 74.3 44 70.5
Gorai.001G227800 Gossypium raimondii HOM05D000045 ORTHO05D000611 4.7e-12 74.3 44 70.5
TWI75G1249 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 8.0e-12 73.6 44 72.7
Duzib138G1407 Durio zibethinus HOM05D000045 ORTHO05D000611 1.0e-11 73.2 44 72.7
Lj1g0012232 Lotus japonicus HOM05D000045 ORTHO05D000611 1.0e-11 73.2 44 72.7
Gohir.A07G196000 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.4e-11 72.8 44 68.2
Lalb_Chr19g0126221 Lupinus albus HOM05D000045 ORTHO05D000611 1.4e-11 72.8 44 72.7
Potri.014G176600 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.4e-11 72.8 44 72.7
Atru.chr6.3530 Acer truncatum HOM05D000045 ORTHO05D000611 1.8e-11 72.4 44 70.5
Sed0014099 Sechium edule HOM05D000045 ORTHO05D000611 1.8e-11 72.4 44 68.2
Cc01_g15970 Coffea canephora HOM05D000045 ORTHO05D000611 1.1e-10 69.7 70 48.6
MSTRG.17964 Avicennia marina HOM05D000045 ORTHO05D000611 1.5e-10 69.3 77 48.1
Actinidia30001 Actinidia chinensis HOM05D000045 ORTHO05D000611 4.4e-10 67.8 76 46.1
PGR083G0403 Punica granatum HOM05D000045 ORTHO05D000611 7.5e-10 67.0 44 63.6
CSS0013030 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 2.8e-09 65.1 44 65.9
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.8e-09 64.3 43 62.8
SGA_v2.0_scaffold77G25306 Striga asiatica HOM05D000045 ORTHO05D000611 4.8e-09 64.3 44 61.4
THA.LOC104799872 Tarenaya hassleriana HOM05D000045 ORTHO05D000611 8.2e-09 63.5 66 47.0
THA.LOC104826647 Tarenaya hassleriana HOM05D000045 ORTHO05D000611 8.2e-09 63.5 61 49.2
Manes.04G043400 Manihot esculenta HOM05D000045 ORTHO05D000611 1.4e-08 62.8 44 63.6
Thecc.04G178600 Theobroma cacao HOM05D000045 ORTHO05D000611 1.4e-08 62.8 44 65.9
Ca_20964_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.8e-08 62.4 44 63.6
COL.COLO4_07676 Corchorus olitorius HOM05D000045 ORTHO05D000611 1.8e-08 62.4 44 63.6
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 2.4e-08 62.0 44 65.9
Glyma.04G111200 Glycine max HOM05D000045 ORTHO05D000611 2.4e-08 62.0 44 63.6
Lalb_Chr15g0080041 Lupinus albus HOM05D000045 ORTHO05D000611 2.4e-08 62.0 44 63.6
QL10p049133 Quercus lobata HOM05D000045 ORTHO05D000611 2.4e-08 62.0 44 63.6
Carub.0004s2575 Capsella rubella HOM05D000045 ORTHO05D000611 3.1e-08 61.6 44 61.4
Potri.017G029400 Populus trichocarpa HOM05D000045 ORTHO05D000611 3.1e-08 61.6 44 63.6
Sabra17G0017900 Salix brachista HOM05D000045 ORTHO05D000611 3.1e-08 61.6 44 63.6
Lj3g0020528 Lotus japonicus HOM05D000045 ORTHO05D000611 4.1e-08 61.2 44 61.4
Nn1g09619 Nelumbo nucifera HOM05D000045 ORTHO05D000611 4.1e-08 61.2 43 67.4
CiPaw.02G054500 Carya illinoinensis HOM05D000045 ORTHO05D000611 5.3e-08 60.8 44 61.4
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 5.3e-08 60.8 45 62.2
Gohir.D02G114101 Gossypium hirsutum HOM05D000045 ORTHO05D000611 5.3e-08 60.8 44 61.4
Medtr3g006370 Medicago truncatula HOM05D000045 ORTHO05D000611 5.3e-08 60.8 44 59.1
ClCG10G017250 Citrullus lanatus HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 61.4
Eucgr.A00087 Eucalyptus grandis HOM05D000045 ORTHO05D000611 7.0e-08 60.5 45 57.8
Gohir.A03G123700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 59.1
Phvul.005G002900 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 61.4
Psat6g044320 Pisum sativum HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 61.4
TWI63G0798 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 61.4
VMungo1080G1100 Vigna mungo HOM05D000045 ORTHO05D000611 7.0e-08 60.5 44 61.4
CANSAT78G0325 Cannabis sativa HOM05D000045 ORTHO05D000611 9.1e-08 60.1 44 61.4
Eucgr.H00706 Eucalyptus grandis HOM05D000045 ORTHO05D000611 9.1e-08 60.1 29 86.2
Glyma.06G323400 Glycine max HOM05D000045 ORTHO05D000611 9.1e-08 60.1 44 61.4
Sp4g25390 Schrenkiella parvula HOM05D000045 ORTHO05D000611 9.1e-08 60.1 44 59.1
AL4G41960 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 59.1
AT2G43280 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 59.1
CARHR138370 Cardamine hirsuta HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 56.8
Ca_07435_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.2e-07 59.7 66 47.0
Thhalv10001648m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 59.1
Manes.11G121700 Manihot esculenta HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 59.1
Sed0011457 Sechium edule HOM05D000045 ORTHO05D000611 1.2e-07 59.7 44 61.4
Eucgr.A00281 Eucalyptus grandis HOM05D000045 ORTHO05D000611 1.6e-07 59.3 45 55.6
MD04G1042100 Malus domestica HOM05D000045 ORTHO05D000611 1.6e-07 59.3 44 59.1
Prupe.1G196000 Prunus persica HOM05D000045 ORTHO05D000611 1.6e-07 59.3 44 59.1
Sp7g09580 Schrenkiella parvula HOM05D000045 ORTHO05D000611 1.6e-07 59.3 45 60.0
TPR.G26846 Trifolium pratense HOM05D000045 ORTHO05D000611 1.6e-07 59.3 29 86.2
BcaC02g07193 Brassica carinata HOM05D000045 ORTHO05D000611 2.7e-07 58.5 44 59.1
C04p70310 Brassica napus HOM05D000045 ORTHO05D000611 2.7e-07 58.5 44 59.1
BolC4t28534H Brassica oleracea HOM05D000045 ORTHO05D000611 2.7e-07 58.5 44 59.1
Cc01_g15980 Coffea canephora HOM05D000045 ORTHO05D000611 2.7e-07 58.5 45 57.8
THA.LOC104803735 Tarenaya hassleriana HOM05D000045 ORTHO05D000611 2.7e-07 58.5 44 59.1
Sabra02G0182300 Salix brachista HOM05D000045 ORTHO05D000611 3.5e-07 58.2 30 80.0
Aqoxy2G04123 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 4.5e-07 57.8 43 58.1
Oeu058203.1 Olea europaea HOM05D000045 ORTHO05D000611 4.5e-07 57.8 28 82.1
Rhsim02G0079400 Rhododendron simsii HOM05D000045 ORTHO05D000611 4.5e-07 57.8 44 59.1
Aa31LG1G25140 Aethionema arabicum HOM05D000045 ORTHO05D000611 5.9e-07 57.4 44 52.3
Duzib212G0630 Durio zibethinus HOM05D000045 ORTHO05D000611 5.9e-07 57.4 45 57.8
FvH4_4g10892 Fragaria vesca HOM05D000045 ORTHO05D000611 5.9e-07 57.4 44 59.1
Rhsim13G0054200 Rhododendron simsii HOM05D000045 ORTHO05D000611 5.9e-07 57.4 49 57.1
RcHm_v2.0_Chr4g0406491 Rosa chinensis HOM05D000045 ORTHO05D000611 5.9e-07 57.4 44 59.1
GSVIVG01001897001 Vitis vinifera HOM05D000045 ORTHO05D000611 5.9e-07 57.4 66 43.9
A04p32610 Brassica napus HOM05D000045 ORTHO05D000611 7.7e-07 57.0 44 56.8
BraA04t18725Z Brassica rapa HOM05D000045 ORTHO05D000611 7.7e-07 57.0 44 56.8
Nn1g09620 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.0e-06 56.6 44 54.5
TPR.G25491 Trifolium pratense HOM05D000045 ORTHO05D000611 1.0e-06 56.6 44 56.8
AL9U11660 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 1.7e-06 55.8 44 52.3
Atru.chr4.1222 Acer truncatum HOM05D000045 ORTHO05D000611 2.2e-06 55.5 44 56.8
Cc07_g21320 Coffea canephora HOM05D000045 ORTHO05D000611 2.2e-06 55.5 44 56.8
Dinv35451 Davidia involucrata HOM05D000045 ORTHO05D000611 2.2e-06 55.5 45 53.3
Aqoxy2G04142 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 2.9e-06 55.1 45 51.1
Rhsim02G0078200 Rhododendron simsii HOM05D000045 ORTHO05D000611 2.9e-06 55.1 44 54.5
Cpa.g.sc9.288 Carica papaya HOM05D000045 ORTHO05D000611 3.8e-06 54.7 44 54.5
PSO675G5125 Papaver somniferum HOM05D000045 ORTHO05D000611 5.0e-06 54.3 50 48.0
MELO3C028820.2 Cucumis melo HOM05D000045 ORTHO05D000611 6.5e-06 53.9 52 53.8
CsaV3_7G026930 Cucumis sativus L. HOM05D000045 ORTHO05D000611 6.5e-06 53.9 52 53.8
CSS0031613 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 8.5e-06 53.5 44 54.5
CSS0049057 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 8.5e-06 53.5 44 54.5
PSO017G3764 Papaver somniferum HOM05D000045 ORTHO05D000611 8.5e-06 53.5 45 57.8
PSO017G5253 Papaver somniferum HOM05D000045 ORTHO05D000611 8.5e-06 53.5 45 51.1
vmacro02832 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 8.5e-06 53.5 71 43.7
GSVIVG01010761001 Vitis vinifera HOM05D000045 ORTHO05D000611 8.5e-06 53.5 44 52.3


User provided reference genes

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